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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattggccttccatttttcctagtttcgatgttttgcaatattagcagtccaatttaaatctcgcgaacttgataatattttgcatgaattagatgtcacttgaatgaaaatggcaactagtaccttccaattcaaatatttgttttgatgttcattgtctatatctcatttcatccagGCAATTTTAGTAAGTCCAACTGGCTGGGCAAATGCTGCAACCATAGATATAATCTATGATTTACTGCATATGATGGGGCGTGATGACATTCCTGTTGGTC

Basic information

species Vitis vinifera
transcript Vv05s0020g02200.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02200.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G28410.1 (Glycine max), 3'ss of exon 7
gtaagattggccttccatttttcctagtttcgatgttttgcaatattagcagtccaatttaaatctcgcgaacttgataatattttgcatgaattaga-tgtcacttgaatgaaaatggcaactagtaccttccaattcaaatatttgttttgatgttcattgtctatatctcatttcatccagGCAATTTTAGTAAGTCCAACTGGCTGGGCAAATGCTGCAACCATAGATATAATCTATGATTTACTGCATATGATGGGGCGTGATGACATTCCTGTTGGTC
                                                             || ||||   | ||  |||| | |||    | ||| | | |  ||| ||| | |       ||  ||  ||      |||| |  ||   | |  |  | || ||        |||  |  |||||||    || || |||||||| ||||||||||||||||| |||||| | |||||||| ||||| || |||||||| |||||||| || || || ||||
-------------------------------------------------------------aagctcgt--atttattaatttgttg----agttatactatagctttaattata-------cttatatgttgttgcacaaagacatggactcacat--aatgact--------tttggtttagGCAATCACTGTGAGCCCAACTGGGTGGGCAAATGCTGCAACAATAGATGTCATCTATGACTTACTACACATGATGGGTCGTGATGATATCCCAGTCGGTC

upper sequence: Vv05s0020g02200.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G28400.2 (Glycine max), 3'ss of exon 9
gtaagattggccttccatttttcctagtttcgatgttttgcaatattagcagtccaatttaaatctcgcgaacttgataatattttgcatgaattagatgtcacttgaatgaaaatggcaactagtacct-tccaattcaaatatttgttttgatgttcattgtctatatctcatttcatccagGCAATTTTAGTAAGTCCAACTGGCTGGGCAAATGCTGCAACCATAGATATAATCTATGATTTACTGCATATGATGGGGCGTGATGACATTCCTGTTGGTC
                                                                                  || ||    | ||| |   ||   || | |    |   | |  ||| | | |  ||   |||| | |   ||  |  | |       |  | |||  |  |||||||  | ||||| |||||||| ||||||||||| ||||| |||||| | |||||||| ||| |||| |||||||| ||||| || || || |||||||
----------------------------------------------------------------------------------ttatgtgacacttaaaatccaa--gatttattgagttgaattatacttattctttttttatatatatagagacatggactcatatagtgacttttggtttagGCAATCATCGTAAGCCCAACTGGGTGGGCAAATGCCGCAACAATAGATGTTATCTATGACTTATTGCACATGATGGGTCGTGACGATATCCCAGTTGGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttccaattcaaatatttgttttgatgttcattgtctatatctcatttcatccagGCAATTTTAGTAAGTCCAACTGGCTGGGCAAATGCTGCAACCATAGATATAATCTATGATTTACTGCATATGATGGGGCGTGATGACATTCCTGTTGGTC
                   ttttgat  putative branch site (score: 4)
                                        tctcatttc  putative PPT
     aattcaaatatttgtt  TA-rich tract