1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccatgagatgtttaaatagttggaactagtagcatttttggtttgatttaagcacctttgttttcaactatttaattatattgattccttggagttgcagGACACAAAAATAAGCGCAAACGGTGGGTTGGCAGCAATGGCAAGTTCAACTTCTACAGATAGAAGTGAAACTGTCTCACTATTGAACAGAGAGGTTGTTA
species | Vitis vinifera |
transcript | Vv05s0020g02160.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATCCTAGCTGCTTCCACAACAACATGCTCCCTGTTGTCTTTCCCCCTGAG GACACAAAAATAAGCACAAACGGTGGGTTGGCAGCAATGGCAAGTTCAACT
genomic: ATCCTAGCTGCTTCCACAACAACATGCTCCCTGTTGTCTTTCCCCCTGAGgtgagatatt ... ggagttgcagGACACAAAAATAAGCGCAAACGGTGGGTTGGCAGCAATGGCAAGTTCAACT
atttaagcacctttgttttcaactatttaattatattgattccttggagttgcagGACACAAAAATAAGCGCAAACGGTGGGTTGGCAGCAATGGCAAGTTCAACTTCTACAGATAGAAGTGAAACTGTCTCACTATTGAACAGAGAGGTTGTTA
tattgat putative branch site (score: 3)
ttccttg CT-rich tract
tttgttttcaactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatgagatgtttaaatagttggaactagtagcatttttggtttgatttaagcacctttgttttcaactatttaattatattgattccttggagttgcagGACACAAAAATAAGCGCAAACGGTGGGTTGGCAGCAATGGCAAGTTCAACTTCTACAGATAGAAGTGAAACTGTCTCACTATTGAACAGAGAGGTTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
-catgaga
- - - - - - - - tagttgg
- - - - - - - - - - - - - - - - - - - tggtttg
- - - - - - - - - - - - - - - - - - - - - - - -ttaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattcc