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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttataactcttctagtctttgtgacaggtgaaattgttgtaagatctccttattcacttggatattcttttctatcagGCTGGCAAAAAGCTTTTGCTTATTACCAACTCAGATTATCATTATACAGACAAAATGATGCAGCATTCCTTTAACAAATTCCTTCCAAATGATATGGGCT

Basic information

species Vitis vinifera
transcript Vv05s0020g00880.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00880.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G17950.1 (Glycine max), 3'ss of exon 9
gtatgcttataactcttctagtctttgtgacaggtgaaattgttgtaagatctccttattcacttggatattcttttctatcagGCTGGCAAAAAGCTTTTGCTTATTACCAACTCAGATTATCATTATACAGACAAAATGATGCAGCATTCCTTTAACAAATTCCTTCCAAATGATATGGGCT
||||   |   | | || ||   ||||    |  |   ||| |  |    |     |  | | || | | |  |  |  | ||||||||||| || ||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| | ||||||||| || |||||||| |
gtattacttctaatgttttatattttgcataacat---attataatgcccttctactgcttatttagttgtcttcatgaaacagGCTGGCAAGAAACTTCTGCTAATTACCAACTCAGATTATCTTTACACAGACAAAATGATGCAGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTT

upper sequence: Vv05s0020g00880.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G21240.1 (Glycine max), 3'ss of exon 8
gtat-gcttataactcttctagtctttgtgacaggtgaaattgttgtaagatctccttattcacttggatattcttttctatcagGCTGGCAAAAAGCTTTTGCTTATTACCAACTCAGATTATCATTATACAGACAAAATGATGCAGCATTCCTTTAACAAATTCCTTCCAAATGATATGGGCT
|||| |||||||     | || ||| ||   |      ||| ||  |    ||| || ||| |||||| | || |  |  | ||||| |||||||| ||| | |||||||||||||||||||||||||||||| ||||||||||||| ||||| || || | ||||||||| ||||| ||||| |
gtattgcttatagtatgtgta-tctctgcctcgcacataat-gtgct----tctgctcatt-acttggttgttttcatgaaacagGCAGGCAAAAAACTTGTACTTATTACCAACTCAGATTATCATTATACACACAAAATGATGCATCATTCATTCAATAGATTCCTTCCCAATGACATGGGTT

upper sequence: Vv05s0020g00880.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA17G04580.1 (Glycine max), 3'ss of exon 9
gtat-gcttataactcttc-tagtctttgtgacaggtgaaattgttgtaagatctccttattcacttggatattcttttctatcagGCTGGCAAAAAGCTTTTGCTTATTACCAACTCAGATTATCATTATACAGACAAAATGATGCAGCATTCCTTTAACAAATTCCTTCCAAATGATATGGGCT
||||  ||| |||  |||  || | |   | |||  | |     || ||     | |||||| | |||    |  |  |  | |||||||||||||| ||| | || ||||||||||||||||||| ||| |||||||||||||||| |||||| ||||| | ||||||||| || |||||||| |
gtattacttctaatgctttatattttgcataacatataattcccttcta----tttcttatttagttg----tcttcattaaacagGCTGGCAAAAAACTTCTACTAATTACCAACTCAGATTATCTTTACACAGACAAAATGATGCGGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTT

upper sequence: Vv05s0020g00880.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT5G48960.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatgcttataactcttctagtctttgt--gacaggtgaaattgttgtaagatctccttattcacttggatattcttttctatcagGCTGGCAAAAAGCTTTTGCTTATTACCAACTCAGATTATCATTATACAGACAAAATGATGCAGCATTCCTTTAACAAATTCCTTCCAAATGATATGGGCT
         |||   ||| |||||||     | |  |  || | |  |  | |    || || |  | |  ||  |  |  || ||||||| || ||||| |||||||| || ||||| |||||||| || ||||||||||||||| ||||||| ||||||||||||||||| ||||| |||| ||
--------gtaatggttc-agtctttacacaatatatctaactatgatg-gtttcagttgttaatattgtcatgttcgttcat-agGCTGGTAAGAAGCTCTTGCTTATCACAAACTCGGATTATCACTACACAGACAAAATGATGAAGCATTCATTTAACAAATTCCTTCCCAATGACATGGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaggtgaaattgttgtaagatctccttattcacttggatattcttttctatcagGCTGGCAAAAAGCTTTTGCTTATTACCAACTCAGATTATCATTATACAGACAAAATGATGCAGCATTCCTTTAACAAATTCCTTCCAAATGATATGGGCT
                                       tattcttttctatc  CT-rich tract
                                      atattcttttctat  TA-rich tract