1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctgtcttgcagcattacctaacaattttcatcatactagcctttggctgcattgattgtgtgcgtttctccatattaacttaaattttctaaaattttagATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCTCCAGCCCCTTCAAGGAGGCTGTTGTATCTGAAGGCTTCGGATTATTTGG
species | Vitis vinifera |
transcript | Vv05s0020g00750.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAG ATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCTEST: gi|110417235|gb|EC983274.1|EC983274
genomic: TTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAGgtatgtattc ... aaaattttagATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCT
EST: TTTTCCTATTTCTTATTGTCTGTGGTGTAATAGCCATTATCATTGTGAAG ATTGTGAACCCCAACAACAAGAGCATCAGGGACGTCCCTGGATTGGCACCTEST: gi|34362779|gb|CF404364.1|CF404364
genomic: TTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAGgtatgtattc ... aaaattttagATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCT
EST: TTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAG ATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCTEST: gi|351044413|gb|FQ442944.1|FQ442944
genomic: TTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAGgtatgtattc ... aaaattttagATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCT
EST: TTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAG ATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCTEST: gi|110400763|gb|EC967341.1|EC967341
genomic: TTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAGgtatgtattc ... aaaattttagATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCT
EST: TTTTCCTATTTCTTATTGTCTGTGGTGTAATAGCCATTATCATTGTGAAG ATTGTGAACCCCAACAACAAGAGCATCAGGGACGTCCCTGGATTGGCACCTEST: gi|110403990|gb|EC969898.1|EC969898
genomic: TTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAGgtatgtattc ... aaaattttagATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCT
EST: TTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAG ATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCTEST: gi|46919418|gb|CN548747.1|CN548747
genomic: TTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAGgtatgtattc ... aaaattttagATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCT
EST: TTTTCCTATTTCTTATTGTGTGTGTTGTAATAGCCATTATCATTGTGAAG ATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCTEST: gi|351033770|gb|FQ447808.1|FQ447808
genomic: TTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAGgtatgtattc ... aaaattttagATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCT
EST: TTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAG ATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCT
genomic: TTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAGgtatgtattc ... aaaattttagATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCT
gctgcattgattgtgtgcgtttctccatattaacttaaattttctaaaattttagATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCTCCAGCCCCTTCAAGGAGGCTGTTGTATCTGAAGGCTTCGGATTATTTGG
ttttcta CT-rich tract
tttctccatattaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtcttgcagcattacctaacaattttcatcatactagcctttggctgcattgattgtgtgcgtttctccatattaacttaaattttctaaaattttagATTGTGAACCCCAACAACAAGAGCATCAAGGACGTCCCTGGATTGGCACCTCCAGCCCCTTCAAGGAGGCTGTTGTATCTGAAGGCTTCGGATTATTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
-tgtcttg
- - - - cagcatt
- - - - - - - - cctaaca
- - - - - - - - - - - - - - - - - - - - - -tggctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacttaaa