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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgctaggcattttctttatcatctgcttaagaattctgtttagcatgggattaatgcttttcatgcatccttgttgtcttcatcatgtattgaggttggtaaggcatttgcagGTTGCTTTTATATCCTTCTTTTGCATCTCTTCTTGGAATAGAGAAACTTCGCCAGTGTTGTGCTACATGGTTGCTTCTTGAACAATACCTTCTACGCTGT

Basic information

species Vitis vinifera
transcript Vv05s0020g00030.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00030.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G38860.1 (Glycine max), 3'ss of exon 2
gtgggtgctaggcattttcttta-tcatctgcttaagaattctgtttagcatgggattaatgcttttcatgcatccttgttgtcttcatcatgtattgaggttggtaaggcatttgcagGTTGCTTTTATATCCTTCTTTTGCATCTCTTCTTGGAATAGAGAAACTTCGCCAGTGTTGTGCTACATGGTTGCTTCTTGAACAATACCTTCTACGCTGT
                  || || |||  | |       || | ||||  |    ||   | || ||   || |  ||  | | || |  || |||  |   |  |  ||||| || |||||| || | |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||  |
-----------------cctatactcactttcaagtttgttttatttaataatatatctgttctattg--gccttatttatttgtttagtatatataaaatcttctggggcatatgtagGTTGGTTCTCTATCCTTCCTTTGCATCTCTTCTTGGGATAGAGAAACTTCGTCAGTGTTGTGCTACATGGTTGATTCTTGAACAATATCTTCTACGCCAT

upper sequence: Vv05s0020g00030.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G28920.1 (Glycine max), 3'ss of exon 2
gtgggtgctaggcattttctttatcatctgcttaagaattctgtttagcatgggattaatgcttttcatgcatccttgttgtc--ttcatcatgtattgaggttggtaaggcatttgcagGTTGCTTTTATATCCTTCTTTTGCATCTCTTCTTGGAATAGAGAAACTTCGCCAGTGTTGTGCTACATGGTTGCTTCTTGAACAATACCTTCTACGCTGT
                     ||  |    ||| | | ||   ||||   |   ||   |   ||  ||    | |  || |   || |  ||||||  |   |  |  | ||| || |||||| || | |||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||| ||||||||||| | |||||||||  |
-------------------cctag-actcactttaaagtttgttttattttataatatgtctgttctattggccttatttatttatttagtatgtatataatcttctgggacatatgtagGTTGGTTCTCTATCCTTCCTTTGCATCTCTTCTTGGGATAGAGAAACTTCGTCAATGTTGTGCTACATGGTTGATTCTTGAACAACATCTTCTACGCCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatgcatccttgttgtcttcatcatgtattgaggttggtaaggcatttgcagGTTGCTTTTATATCCTTCTTTTGCATCTCTTCTTGGAATAGAGAAACTTCGCCAGTGTTGTGCTACATGGTTGCTTCTTGAACAATACCTTCTACGCTGT
                          atgtatt  TA-rich tract