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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatgaaatttatattgaatcatcccataatgttagtaggatttaaagaagtggcctcaattatcctgcgcaaactagggactctagtgttgggttatgatggactgaccatgtgtgattcccatgtgcagGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGTGCAGAAAATGGGGAAACAGGGGATTGAATCAGGATTCAGCCCAAATAGT

Basic information

species Vitis vinifera
transcript Vv04s0079g00200.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110381228|gb|EC946550.1|EC946550
EST:     TTTGTTGACAGGGAGAATGATGTGCTTCTCCTTGGAGACGACCCATGGGA                         GGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
genomic: TTTGTTGACAGGGAGAACGATGTGCTTCTCCTTGGAGACGACCCATGGGAgtaagtatga ... ccatgtgcagGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
EST: gi|110366379|gb|EC930262.1|EC930262
EST:     TCTCCTTGGAGACGACCCATGGGA                         GGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
genomic: TCTCCTTGGAGACGACCCATGGGAgtaagtatga ... ccatgtgcagGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
EST: gi|110376730|gb|EC941802.1|EC941802
EST:     TTTGTTGACAGGGAGAATGATGTGCTTCTCCTTGGAGACGACCCATGGGA                         GGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
genomic: TTTGTTGACAGGGAGAACGATGTGCTTCTCCTTGGAGACGACCCATGGGAgtaagtatga ... ccatgtgcagGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
EST: gi|87586113|gb|DY474560.1|DY474560
EST:     TTTGTTGACAGGGAGAATGATGTGCTTCTCCTTGGAGACGACCCATGGGA                         GGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
genomic: TTTGTTGACAGGGAGAACGATGTGCTTCTCCTTGGAGACGACCCATGGGAgtaagtatga ... ccatgtgcagGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
EST: gi|110362405|gb|EC925936.1|EC925936
EST:     TTTGTTGACAGGGAGAATGATGTGCTTCTCCTTGGAGACGACCCATGGGA                         GGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
genomic: TTTGTTGACAGGGAGAACGATGTGCTTCTCCTTGGAGACGACCCATGGGAgtaagtatga ... ccatgtgcagGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agggactctagtgttgggttatgatggactgaccatgtgtgattcccatgtgcagGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGTGCAGAAAATGGGGAAACAGGGGATTGAATCAGGATTCAGCCCAAATAGT
                          gactgac  putative branch site (score: 2)
                                          ttcccat  putative PPT
                  ttatgat  TA-rich tract