1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttttttttttctttctaattctacttttgtttctcaagcctaggatgttgcaactctacaatttaatatccatccttgaacaaatgtcagtttcatatgaacagggacttctttttccattttttcataacagagatgtttcctatacagGCCCTTGCTAAAGATCTTCCTTGGAAGATGAAGGAATCACGAGTTTTAGAGATTCTTCAAGCA
species | Vitis vinifera |
transcript | Vv04s0023g03420.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTATCGATGTGGATAAAAATGGCTCTATTAGCCTTGAAGAAATGAGACAG GCCCTTGCTAAAGATCTTCCTTGGAAGATGAAGGAATCACGAGTTTTAGAGEST: gi|30255725|gb|CB971857.1|CB971857
genomic: CTATCGATGTGGATAAAAATGGCTCTATTAGCCTTGAAGAAATGAGACAGgttttttttt ... tcctatacagGCCCTTGCTAAAGATCTTCCTTGGAAGATGAAGGAATCACGAGTTTTAGAG
EST: CTATCGATGTGGATAAAAATGGCTCTATTAGCCTTGAAGAAATGAGACAG GCCCTTGCTAAAGATCTTCCTTGGAAGATGAAGGAATCACGAGTTTTAGAGEST: gi|30128033|gb|CB913372.1|CB913372
genomic: CTATCGATGTGGATAAAAATGGCTCTATTAGCCTTGAAGAAATGAGACAGgttttttttt ... tcctatacagGCCCTTGCTAAAGATCTTCCTTGGAAGATGAAGGAATCACGAGTTTTAGAG
EST: TAAAAATGGCTCTATTAGCCTTGAAGAAATGAGACAG GCCCTTGCTAAAGATCTTCCTTGGAAGATGAAGGAATCACGAGTTTTAGAGEST: gi|30255795|gb|CB971927.1|CB971927
genomic: TAAAAATGGCTCTATTAGCCTTGAAGAAATGAGACAGgttttttttt ... tcctatacagGCCCTTGCTAAAGATCTTCCTTGGAAGATGAAGGAATCACGAGTTTTAGAG
EST: CTATCGATGTGGATAAAAATGGCTCTATTAGCCTTGAAGAAATGAGACAG GCCCTTGCTAAAGATCTTCCTTGGAAGATGAAGGAATCACGAGTTTTAGAG
genomic: CTATCGATGTGGATAAAAATGGCTCTATTAGCCTTGAAGAAATGAGACAGgttttttttt ... tcctatacagGCCCTTGCTAAAGATCTTCCTTGGAAGATGAAGGAATCACGAGTTTTAGAG
tatgaacagggacttctttttccattttttcataacagagatgtttcctatacagGCCCTTGCTAAAGATCTTCCTTGGAAGATGAAGGAATCACGAGTTTTAGAGATTCTTCAAGCA
tcataac putative branch site (score: 2)
tgtttcct putative PPT
tttttccatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttttttttctttctaattctacttttgtttctcaagcctaggatgttgcaactctacaatttaatatccatccttgaacaaatgtcagtttcatatgaacagggacttctttttccattttttcataacagagatgtttcctatacagGCCCTTGCTAAAGATCTTCCTTGGAAGATGAAGGAATCACGAGTTTTAGAGATTCTTCAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA