Sequence
atgc intronic sequence ATGC exonic sequence...taattactgtattagtaagaatatcaataaccactttcttgcactggtgagtttatcttgcataaaccatgtcataacctgttttactttcttgatgtagCCGTTGCCTTATGTTCCTACCATAACAAACTACACTCAACTCTGGTGGGTTCCTAATGTTGTTGTGGCTCATCAAAGGGAAGGAATAGAAGCTGTTCACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os02g01070.1 (Oryza sativa), 3'ss of exon 7
------taattactgtattagtaagaatatca-ataaccacttt-cttgcac-tggtgagtttatcttgcataaaccatgtcataacctgttttactttcttgatgtagCCGTTGCCTTATGTTCCTACCATAACAAACTACACTCAACTCTGGTGGGTTCCTAATGTTGTTGTGGCTCATCAAAGGGAAGGAATAGAAGCTGTTCACT
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ctttttcccccaatacaatcacagtggtctcacaccaaaattttatttacatatatcgtgttactttatcatgaaatgtaacatc-tttcctctactgcagTCACAAAG--GACGCTTTATGTTCCGACAATCACCAACTATACTCAAGTTTGGTGGGTTCCTAATGTTGTTGTTGCCCACGAAAAAGAAGGGATAGAGGCTG------
upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA01G37580.1 (Glycine max), 3'ss of exon 9
---------taattactgtattagtaagaatatcaataaccactttcttgcactggtgagtttatcttgcataaaccatgtcataacctgttttactttcttgatgtagCCGTTGCCTTATGTTCCTACCATAACAAACTACACTCAACTCTGGTGGGTTCCTAATGTTGTTGTGGCTCATCAAAGGGAAGGAATAGAAGCTGTTCACT
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taacaaataaaatcaacatgtta-tgacactgagaagataaactttttgaaagagatggagaaataatttgca------gtcataa--tgtttctctcttgcaatgcagCACCTTCCTTACGTTCCCACCATAACCAACTACACTCAAGTTTGGTGGGTTCCTAATGTTGTTGTGGCTCATCAGAAGGAGGGCATAGAAGCTCTTCATT
upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA11G07720.1 (Glycine max), 3'ss of exon 9
-------taattactgtattagtaagaatatcaataaccactttcttgcactggtgagtttatcttgcataaaccatgtcataacctgttttactttcttgatgtagCCGTTGCCTTATGTTCCTACCATAACAAACTACACTCAACTCTGGTGGGTTCCTAATGTTGTTGTGGCTCATCAAAGGGAAGGAATAGAAGCTGTTCACT
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acaaaaaaaatcgccatgtta-tgacactatgagaaaatgaattttttga--gaaagatggagaaagaatttgca--gtcataa--tgtttctaccttggaatgcagCACCTTCCTTATGTTCCTACCATAACCAACTACACTCAAGTTTGGTGGGTTCCCAATGTTGTTGTGTCTCATCAGAAGGAGGGCATAGAAGCTCTTCATC
upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT3G51050.1 (Arabidopsis thaliana), 3'ss of exon 9
taattactgtattagtaagaatatcaataaccactttcttgcactggtgagtttatcttgcataaaccatgtcataacctgttttactttcttgatgtagCCGTTGCCTTATGTTCCTACCATAACAAACTACACTCAACTCTGGTGGGTTCCTAATGTTGTTGTGGCTCATCAAAGGGAAGGAATAGAAGCTGTTCACT
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-----------gtgaagctcttataaaacgtgaactacccacatcaaaaataccaatatttgtttatgatagcaaagc-------aacatgttgatgcagGGTATGCAATACATTCCGACGATAACTAATTACACGAAGCTTTGGTGGGTTCCTAATGTTGTTGTGGCTCATCAAAAGGAAGGAATTGAAGCTATTCATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33403432|gb|CF209059.1|CF209059EST: ACCTGATAGGAAAAGCTGCCAAGTATGCTAGTTCAGCAAAATCCAAGAAG CCGTTGCCTTATGTTCCTACCATAACAAACTACACTCAACTCTGGTGGGTT
genomic: ACCTGATAGGAAAAGCTGCCAAGTATGCTAGTTCAGCAAAATCCAAGAAGgtaaagttcc ... cttgatgtagCCGTTGCCTTATGTTCCTACCATAACAAACTACACTCAACTCTGGTGGGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtgagtttatcttgcataaaccatgtcataacctgttttactttcttgatgtagCCGTTGCCTTATGTTCCTACCATAACAAACTACACTCAACTCTGGTGGGTTCCTAATGTTGTTGTGGCTCATCAAAGGGAAGGAATAGAAGCTGTTCACT
cctgttttactttctt CT-rich tract
ttttacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taattactgtattagtaagaatatcaataaccactttcttgcactggtgagtttatcttgcataaaccatgtcataacctgttttactttcttgatgtagCCGTTGCCTTATGTTCCTACCATAACAAACTACACTCAACTCTGGTGGGTTCCTAATGTTGTTGTGGCTCATCAAAGGGAAGGAATAGAAGCTGTTCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - aagaata
- - - - - - - - - - - - -aataacc
- - - - - - - - - - - - - - - - - - -cttgcac
- - - - - - - - - - - - - - - - - - - - - - tggtgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cataacc