Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatacgtgaaccccagattagaagaatataaaggatctgcttcatatttatcttttaacactttctttaaagtttccataatttttttttatgaatttatactctgcagAGATCTGTGGCATCAACAGGCAAGAGAACTACCATCCAGTTTTCAGATCTCAAACGGAAAAGATATTGGTTTCCTTTGATG

Basic information

species Vitis vinifera
transcript Vv04s0023g01860.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01860.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA02G06280.1 (Glycine max), 3'ss of exon 9
-------------------------------gtaaatacgtgaaccccagattagaagaatataaaggatctgcttcata-tttatcttttaacactttctttaaagtttccataatttttttttatgaatttatactctgcagAGATCTGTGGCATCAACAGGCAAGAGAACTACCATCCAGTTTTCAGATCTCAAACGGAAAAGATATTGGTTTCCTTTGATG
                                |    ||   ||  |  ||    | | |||||  || |    || | | |||| ||||  |   | | ||| | |     |  |||   |  ||   ||||    | |  ||||||||||||| ||||| || || ||| |||| ||||  ||| ||||||||||  |||||||||||||||| || || |||
gtattttcctggctcatcatcatggctaaaattttccacccaaatgcacgacagtatgcatatatggggtgcagttaagagtttagctttagaatatgtatttcagg-----aacattcactactaaccattttacttttctagAGATCTGTGGCTTCAACGGGAAAAAGAGCTACAATCCGATTTGCAGATCTCAAGAGGAAAAGATATTGGTTCCCCTTAATG

upper sequence: Vv04s0023g01860.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G25310.1 (Glycine max), 3'ss of exon 9
-------------------------------gtaaatacgtgaaccccagattagaagaatata-aaggatctgcttcatatttatcttt-taacactttctttaaagtttccataatttttttttatgaatttatactctgcagAGATCTGTGGCATCAACAGGCAAGAGAACTACCATCCAGTTTTCAGATCTCAAACGGAAAAGATATTGGTTTCCTTTGATG
                                |    ||   ||  |  |||  || | ||||   |||  | | |   ||| || |||| ||| |  |  || | |      | |     |  | |  | ||||   | |  ||||||||||||| ||||| || || ||| || | ||||  ||| ||||||||||  |||||||||||||||| || || |||
gtatttttttggctcatcattgtggctaaaattttccacccaaatgcatgataggatgcatatgtgaggtgcagttaagtatatagctttataatatgtatttcagaa-----acatgcactgctaaccattttac-ttttctagAGATCTGTGGCTTCAACGGGAAAAAGAGCTGCAATCCGATTTGCAGATCTCAAGAGGAAAAGATATTGGTTCCCGTTAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaacactttctttaaagtttccataatttttttttatgaatttatactctgcagAGATCTGTGGCATCAACAGGCAAGAGAACTACCATCCAGTTTTCAGATCTCAAACGGAAAAGATATTGGTTTCCTTTGATG
 ttttaac  putative branch site (score: 2)
       tttctttaaagtttcc  TA-rich tract