Sequence
atgc intronic sequence ATGC exonic sequencegtaagggctaatgcattgaagtgatcatttttcatagcaacaggtactttcttgtcttttattttaagcttccatcaagtttgaatgttctctttattttatgggcagGGACATCATCACTTGCCTGAGACTAGAGGACTCTGCCTGTCCGAAGAACAGACTGTTAGCACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA02G06720.2 (Glycine max), 3'ss of exon 8
gtaagggctaatgcattgaagtgatcatttttcatagcaacaggtactttcttgtcttttattttaagc-ttccatcaagtttgaatgttctctttattttatgggcagGGACATCATCACTTGCCTGAGACTAGAGGACTCTGCCTGTCCGAAGAACAGACTGTTAGCACT
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gtaaatgttaatgctttcaactt-tcattctatgttttgccttttatttctattatttacatcataccccttccatt--gttctaattttgcattgcttttgaatgtagGGTCATCATCACTTACCTGAAACCAGAGGACTTTGCTTGTCCGAAGAGCAAACTGTTCCCACT
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G19010.1 (Glycine max), 3'ss of exon 7
gtaagggctaatgcattgaagtgatcatttttcatagcaacaggtactttcttgtcttttattttaagc-ttccatcaagtttgaatgttctctttattttatgggcagGGACATCATCACTTGCCTGAGACTAGAGGACTCTGCCTGTCCGAAGAACAGACTGTTAGCACT
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gtaaatgttaatgttttcaactt-tcattctatgttttgccttttatttctcttctttacatcataccccttccatt--gttctaattttgcattgcttttgaatgtagGGTCATCATCACTTACCTGAAACCAGAGGACTTTGCTTGTCCGAAGAGCAAAATGTTCCCACT
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagggctaatgcattgaagtgatcatttttcat-agcaacaggtactttcttgtcttttattttaagcttccatcaagtttgaatg--ttctctttattttatgggcagGGACATCATCACTTGCCTGAGACTAGAGGACTCTGCCTGTCCGAAGAACAGACTGTTAGCACT
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---------------gtaaaacctctatatcttattgatactatgtttatactctctctttctctctcgct--catttgtttcaacctacttctatctaattttgctgcagGGACATCATCATTTACCTGAAACTAGAGGACTTTGTTTGTCTGAAGAACAAACTGTCACCACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110720145|gb|EE095821.1|EE095821EST: TCTTGGTTGAGAGACNAGCACTAAATGAGGCCATGGAGGGAGAAAAGA-T GGACATCATCACTTGCCTGAGACTAGAGGACTCTGCCTGTCCGAAGAACAG
genomic: TCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATgtaagggcta ... ttatgggcagGGACATCATCACTTGCCTGAGACTAGAGGACTCTGCCTGTCCGAAGAACAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtcttttattttaagcttccatcaagtttgaatgttctctttattttatgggcagGGACATCATCACTTGCCTGAGACTAGAGGACTCTGCCTGTCCGAAGAACAGACTGTTAGCACT
tgttctctttatttt CT-rich tract
ttctctttattttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagggctaatgcattgaagtgatcatttttcatagcaacaggtactttcttgtcttttattttaagcttccatcaagtttgaatgttctctttattttatgggcagGGACATCATCACTTGCCTGAGACTAGAGGACTCTGCCTGTCCGAAGAACAGACTGTTAGCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC