1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtgaaaaccccagtaacctcagtgccctcctctacatttaccattctgctcttgtgagagaacctaacatgtttccttgcagTTGAACATTACAGGACAATTTCTGGGTTTTCTTGGTTCTGGCTTGTATGCCTACTACAAGCTCATAGGGAAGTAACTGCATGAGCTGTTGGGAGGATCGG
species | Vitis vinifera |
transcript | Vv04s0008g05570.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTACCATTGGACTTGGCTGGATGATTTTTGGGGGGCTTCCTTTTGATATT TTGAACATTACAGGACAATTTCTGGGTTTTCTTGGTTCTGTCTTGTATGCCEST: gi|352768138|gb|FQ467277.1|FQ467277
genomic: TTACCATTGGACTTGGCTGGATGATTTTTGGGGGGCTTCCTTTTGATATTgtgagtgaaa ... ttccttgcagTTGAACATTACAGGACAATTTCTGGGTTTTCTTGGTTCTGGCTTGTATGCC
EST: TTACCATTGGACTTGGCTGGATGATTTTTGGGGGGCTTCCTTTTGATATT TTGAACATTACAGGACAATTTTTGGGTTTTCTTGGTTCTGGCTTGTATGCC
genomic: TTACCATTGGACTTGGCTGGATGATTTTTGGGGGGCTTCCTTTTGATATTgtgagtgaaa ... ttccttgcagTTGAACATTACAGGACAATTTCTGGGTTTTCTTGGTTCTGGCTTGTATGCC
tcctctacatttaccattctgctcttgtgagagaacctaacatgtttccttgcagTTGAACATTACAGGACAATTTCTGGGTTTTCTTGGTTCTGGCTTGTATGCCTACTACAAGCTCATAGGGAAGTAACTGCATGAGCTGTTGGGAGGATCGG
acctaac putative branch site (score: 2)
tgtttcctt CT-rich tract
tacattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgaaaaccccagtaacctcagtgccctcctctacatttaccattctgctcttgtgagagaacctaacatgtttccttgcagTTGAACATTACAGGACAATTTCTGGGTTTTCTTGGTTCTGGCTTGTATGCCTACTACAAGCTCATAGGGAAGTAACTGCATGAGCTGTTGGGAGGATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT