1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgatgcgaatgcattcaatcgcagaaggatgatgtgatagcttcttaaatatacacgtttagattacgtccccttaaatttgtttgtactttgactgcagGGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAG
species | Vitis vinifera |
transcript | Vv04s0008g03770.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAG GGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATEST: gi|110404843|gb|EC970367.1|EC970367
genomic: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAGgtattaagtt ... ttgactgcagGGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTAT
EST: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAG GGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATEST: gi|30306097|gb|CB982891.1|CB982891
genomic: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAGgtattaagtt ... ttgactgcagGGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTAT
EST: AACCCACCCATTCATGGTGCATCTGTCGTTGCAATCATCCTGAAAAACAG GGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATEST: gi|161716869|gb|FC068115.1|FC068115
genomic: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAGgtattaagtt ... ttgactgcagGGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTAT
EST: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAG GGATATGTACAATGAATGGEST: gi|45770794|gb|CN006646.1|CN006646
genomic: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAGgtattaagtt ... ttgactgcagGGATATGTACAATGAATGG
EST: GCAATCATCCTGAAAAACAG GGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATEST: gi|352776804|gb|FQ472691.1|FQ472691
genomic: GCAATCATCCTGAAAAACAGgtattaagtt ... ttgactgcagGGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTAT
EST: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAG GGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATEST: gi|110388301|gb|EC953036.1|EC953036
genomic: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAGgtattaagtt ... ttgactgcagGGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTAT
EST: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAG GGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATEST: gi|110372200|gb|EC936351.1|EC936351
genomic: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAGgtattaagtt ... ttgactgcagGGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTAT
EST: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAG GGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATEST: gi|33402663|gb|CF208290.1|CF208290
genomic: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAGgtattaagtt ... ttgactgcagGGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTAT
EST: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAG GGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATEST: gi|30306178|gb|CB982972.1|CB982972
genomic: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAGgtattaagtt ... ttgactgcagGGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTAT
EST: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAG GGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATEST: gi|29783123|gb|CB349091.2|CB349091
genomic: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAGgtattaagtt ... ttgactgcagGGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTAT
EST: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAG GGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTAT
genomic: AACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAGgtattaagtt ... ttgactgcagGGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTAT
taaatatacacgtttagattacgtccccttaaatttgtttgtactttgactgcagGGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAG
ctttgac putative branch site (score: 4)
ttaaatttgtttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgcgaatgcattcaatcgcagaaggatgatgtgatagcttcttaaatatacacgtttagattacgtccccttaaatttgtttgtactttgactgcagGGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAG
- - - gaatgca
- - - - - - - - - - - agaagga
- - - - - - - - - - - - - - -tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - aaatata