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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtttcaaactctgaatttttctcatcaacaaaaaattattaagcttactgtattttacaaactaggagaataatgtaaatcaaacaacttaggcatggtagatgtattcacattctctagttaactgattgtgtttgcagGTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCCAACTGCTCCAGACAATAGTTTAGGGTCTTCCAATCAATTACAG

Basic information

species Vitis vinifera
transcript Vv04s0008g03180.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30322576|gb|CD005838.1|CD005838
EST:     GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAA                         GTTAAATTTATTGGATGCAACTATGAAAGCACCAGTTATTGAATTCCATCC
genomic: GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAAgtattgtttc ... gtgtttgcagGTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCC
EST: gi|110425749|gb|EC992140.1|EC992140
EST:     GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAA                         GTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCC
genomic: GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAAgtattgtttc ... gtgtttgcagGTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCC
EST: gi|110694624|gb|EE071891.1|EE071891
EST:     CTTTTGTGTGACCATCTAAA                         GTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCC
genomic: CTTTTGTGTGACCATCTAAAgtattgtttc ... gtgtttgcagGTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCC
EST: gi|32267964|gb|CD717123.1|CD717123
EST:     GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAA                         GTTAAATTTATTGGATGCAACTATGAAAGCACCAGTTATTGAATTCCATCC
genomic: GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAAgtattgtttc ... gtgtttgcagGTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCC
EST: gi|34417073|gb|CF415827.1|CF415827
EST:     GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAA                         GTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCC
genomic: GAATACTTGGAGGATGAGCCTTGGTTGAAGCTTTTGTGTGACCATCTAAAgtattgtttc ... gtgtttgcagGTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttaggcatggtagatgtattcacattctctagttaactgattgtgtttgcagGTTAAATTTATTGGATGCAACTATGAAAGCATCAGTTATTGAATTCCATCCAACTGCTCCAGACAATAGTTTAGGGTCTTCCAATCAATTACAG
                                     aactgat  putative branch site (score: 3)
                atgtatt  TA-rich tract