Sequence
atgc intronic sequence ATGC exonic sequencegtacgtgcttcttacccagtgaaggccaaatcgttgaaatctgttaacttggttataattcagaattgttttttctcttttgaatggtagGGACTTGTCCTACAACCGGCTAACAGGAGAGATTCCTTTCAATATTGGGTTCCTGCAAGTAGCTACATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA04G05910.1 (Glycine max), 3'ss of exon 3
-------gtacgtgcttcttac----ccagtgaaggccaaatcgttgaaatctgttaacttggttataattcagaattgttttttctcttttgaatggtagGGACTTGTCCTACAACCGGCTAACAGGAGAGATTCCTTTCAATATTGGGTTCCTGCAAGTAGCTACATT
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gggtcttgtatgtatatccaactgtatctgtgtgaccgacttcgcttcaccatgtcttctcttttcttttttaatat-attctattaatgtcacttgtcagGGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTATCTGCAAGTAGCAACTCT
upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA17G34380.1 (Glycine max), 3'ss of exon 10
gtacgtgcttcttacccagtgaaggccaaatcgttgaaatctgttaa-cttggttataattcagaattgttttttctcttttgaatggtagGGACTTGTCCTACAACCGGCTAACAGGAGAGATTCCTTTCAATATTGGGTTCCTGCAAGTAGCTACATT
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------gtatgtaatccagttg----catgactttgacataccttgttcttattttctttttacctttctaatctcttctgttgatgccagGGATTTATCCTACAACCAACTAACTGGAGAGATACCATTCAATATTGGATTCTTGCAAGTAGCAACTTT
upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA06G05900.1 (Glycine max), 3'ss of exon 10
gtacgtgcttcttacccagtgaaggccaaatcgttgaaatctgttaacttggttataattcagaattgttttttctcttttgaatggtagGGACTTGTCCTACAACCGGCTAACAGGAGAGATTCCTTTCAATATTGGGTTCCTGCAAGTAGCTACATT
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gtatgtatatccaact--gtatctgtgtgaccgactttgcct--caccatgttttctcttctcttttttaatatattctattgatgtcagGGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTATCTGCAAGTAGCAACTCT
upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA14G11220.1 (Glycine max), 3'ss of exon 9
gtacgtgcttcttacccagtgaaggccaaatcgttgaaatctgttaacttggttataattcagaattgttttttctcttttg--aatggtagGGACTTGTCCTACAACCGGCTAACAGGAGAGATTCCTTTCAATATTGGGTTCCTGCAAGTAGCTACATT
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------gtatgtaatccaatt---gcttgact-ttgccataccttgttcttattctcttttttacctttctaatgtcttctgttaatgccagGGATTTATCCTACAACCAATTAACTGGAGAGATACCATTCAATATTGGATTCTTGCAAGTAGCAACTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaatctgttaacttggttataattcagaattgttttttctcttttgaatggtagGGACTTGTCCTACAACCGGCTAACAGGAGAGATTCCTTTCAATATTGGGTTCCTGCAAGTAGCTACATT
tgttaac putative branch site (score: 2)
ttgttttttctctttt putative PPT
ttataattcagaattg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgtgcttcttacccagtgaaggccaaatcgttgaaatctgttaacttggttataattcagaattgttttttctcttttgaatggtagGGACTTGTCCTACAACCGGCTAACAGGAGAGATTCCTTTCAATATTGGGTTCCTGCAAGTAGCTACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA