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...tacatggaatttaatggctccaaaagcatatgatacaaaattcgaagttgtcatttggttgattttgatgcataatctggattttgtttttgagtttcagTTCCTGAGATTGAGCAGGGACTTTCAGATGCTGCACATGCAAAAGTGACTGTCAGCTTCACTCCTCACCTAATGCCAATG
species | Vitis vinifera |
transcript | Vv03s0063g01110.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGAAATAGCTGAAGGCATTCATTCTTATGGTATTACAAGGCATCGCCATG TTCCTGAGATTGAGCAGGGACTTTCAGATGCTGCACATGCAAAAGTGACTGEST: gi|30134557|gb|CB919895.1|CB919895
genomic: TGAAATAGCTGAAGGCATTCATTCTTATGGTATTACAAGGCATCGCCATGgtaagatttt ... tgagtttcagTTCCTGAGATTGAGCAGGGACTTTCAGATGCTGCACATGCAAAAGTGACTG
EST: TGAAATAGCTGAAGGCATTCATTCTTATGGTATTACAAGGCATCGCCATG TTCCTGAGATTGAGCAGGGACTTTCAGATGCTGCACATGCAAAAGTGACTGEST: gi|30320747|gb|CD004009.1|CD004009
genomic: TGAAATAGCTGAAGGCATTCATTCTTATGGTATTACAAGGCATCGCCATGgtaagatttt ... tgagtttcagTTCCTGAGATTGAGCAGGGACTTTCAGATGCTGCACATGCAAAAGTGACTG
EST: TGAAATAGCTGAAGGCATTCATTCTTATGGTATTACAAGGCATCGCCATG TTCCTGAGATTGAGCAGGGACTTTCAGATGCTGCACATGCAAAAGTGACTGEST: gi|27583381|gb|CB006076.1|CB006076
genomic: TGAAATAGCTGAAGGCATTCATTCTTATGGTATTACAAGGCATCGCCATGgtaagatttt ... tgagtttcagTTCCTGAGATTGAGCAGGGACTTTCAGATGCTGCACATGCAAAAGTGACTG
EST: TGAAATAGCTGAAGGCATTCATTCTTATGGTATTACAAGGCATCGCCATG TTCCTGAGATTGAGCAGGGACTTTCAGATGCTGCACATGCAAAAGTGACTG
genomic: TGAAATAGCTGAAGGCATTCATTCTTATGGTATTACAAGGCATCGCCATGgtaagatttt ... tgagtttcagTTCCTGAGATTGAGCAGGGACTTTCAGATGCTGCACATGCAAAAGTGACTG
agttgtcatttggttgattttgatgcataatctggattttgtttttgagtttcagTTCCTGAGATTGAGCAGGGACTTTCAGATGCTGCACATGCAAAAGTGACTGTCAGCTTCACTCCTCACCTAATGCCAATG
ttttgat putative branch site (score: 4)
ttttgttttt putative PPT
attttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatggaatttaatggctccaaaagcatatgatacaaaattcgaagttgtcatttggttgattttgatgcataatctggattttgtttttgagtttcagTTCCTGAGATTGAGCAGGGACTTTCAGATGCTGCACATGCAAAAGTGACTGTCAGCTTCACTCCTCACCTAATGCCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
tacatgg
- - - - - - - - gctccaa
- - - - - - - - - - - - -gcatatg
- - - - - - - - - - - - - - - - atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgcat