Sequence
atgc intronic sequence ATGC exonic sequence...tttaattttgttattaagcacctttgatgttgcaaatttattacaaagattttgtcttttccgttctcaagtaatatatattttgcaaatgttgtttcagGATTGTCAAAGCTAACATCTGATCCCAGATCAGCTATCAGAAAAAGTTCTTTGGAAGTGCTTTTTAACATCCTAAAGGATCATGGTCATCTTTTTTCACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA14G00230.1 (Glycine max), 3'ss of exon 10
---tttaattttgttattaagcacctttgatgttgcaaatttattacaaagattttgtcttttccgttctcaagtaatatatattttgcaaatgttgtttcagGATTGTCAAAGCTAACATCTGATCCCAGATCAGCTATCAGAAAAAGTTCTTTGGAAGTGCTTTTTAACATCCTAAAGGATCATGGTCATCTTTTTTCACG
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tgatttaaccacatt-ttgtgcagcagtgagataacataa--attccataactcttgtctgttctttctgctttaagttaatatttttatattttcattgcagGGTTATCAAAACTAACTTCTGATCCAAGATCAGCTATCAGAAAGAGTTCTTTGGAGATGCTTTTTAACATTTTGAAGGATCATGGTCATCTATTCTCCCA
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA02G48200.1 (Glycine max), 3'ss of exon 9
tttaattttgttattaagcaccttt--gatgttgcaaat--ttattacaaagattttgtcttttccgttctcaagtaatatatattttgcaaatgttgtttcagGATTGTCAAAGCTAACATCTGATCCCAGATCAGCTATCAGAAAAAGTTCTTTGGAAGTGCTTTTTAACATCCTAAAGGATCATGGTCATCTTTTTTCACG
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--tgagataaca--taaactccataaggatatttcaggccatttttccataactcttgcctgttctttatactttaagttaatatttttatattttcattgaagGGTTATCAAAACTAACTTCTGACCCAAGATCAGCTATCAGAAAGAGTTCTTTGGAGGTGCTTTTTAACATTTTGAAGGATCATGGTCATCTATTCTCCCA
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT4G38200.1 (Arabidopsis thaliana), 3'ss of exon 9
-----------------------------------------------------tttaattttgttattaagcacctttgatgttgcaaatttattacaaagattttgtcttttccgttctcaagtaatatatattttgcaaatgttgtttcagGATTGTCAAAGCTAACATCTGATCCCAGATCAGCTATCAGAAAAAGTTCTTTGGAAGTGCTTTTTAACATCCTAAAGGATCATGGTCATCTTTTTTCACG
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gtaatctatttttaataatacttctgtttaaatgcgtcaacaaattatgagcatcttacattttccgaattcacatatgccattgctaatgtgt--ccaacttggttgaatttgcattctaatcaaaattctgttatattcat-taattacagGATTGTCTAAGCTAACTTCTGATTCCAGATCAGCAATCCGTAAAAGCTCCTTGGAAGTGCTCTTTAATATTTTGAAGGATCATGGCCATATTTTTTCACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagattttgtcttttccgttctcaagtaatatatattttgcaaatgttgtttcagGATTGTCAAAGCTAACATCTGATCCCAGATCAGCTATCAGAAAAAGTTCTTTGGAAGTGCTTTTTAACATCCTAAAGGATCATGGTCATCTTTTTTCACG
ttgtttc CT-rich tract
aagtaatatatatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttaattttgttattaagcacctttgatgttgcaaatttattacaaagattttgtcttttccgttctcaagtaatatatattttgcaaatgttgtttcagGATTGTCAAAGCTAACATCTGATCCCAGATCAGCTATCAGAAAAAGTTCTTTGGAAGTGCTTTTTAACATCCTAAAGGATCATGGTCATCTTTTTTCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - -gcacctt
- - - - - - - - - - - - - -tgttgca
- - - - - - - - - - - - - - - - - - - - - acaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgca