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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatttaagaacaccccagtttacagacctattttactgtctgatttgattgctatatgaatagatcaatgccgcttgaattgacaacatatattttacatattcagGTCTTGGATGATCGATCACGTGATGAACGTCTGCTCACTTTGTTAGGGAAATACCACAAGTCCCAAAG

Basic information

species Vitis vinifera
transcript Vv02s0109g00380.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71862644|gb|DT011699.1|DT011699
EST:     TAGGTTCAGAGGATTTAGCTGCCAACCATGATGTTATGCAAATAGTGGAG                         GTCTTGGATGATCGATCACGTGATGAACGTCTGCTCACTTTGTTAGGGAAA
genomic: TAGGTTCAGAGGATTTAGCTGCCAACCATGATGTTATGCAAATAGTGGAGgtataattta ... acatattcagGTCTTGGATGATCGATCACGTGATGAACGTCTGCTCACTTTGTTAGGGAAA
EST: gi|27586192|gb|CB008887.1|CB008887
EST:     TAGGTTCAGAGGATTTAGCTGCCAACCATGATGTAATGCAAATAGTGGAG                         GTCTTGGATGATCGATCACGTGATGAACGTTTGCTCACTTTGTTAGGGAAA
genomic: TAGGTTCAGAGGATTTAGCTGCCAACCATGATGTTATGCAAATAGTGGAGgtataattta ... acatattcagGTCTTGGATGATCGATCACGTGATGAACGTCTGCTCACTTTGTTAGGGAAA
EST: gi|110410371|gb|EC976052.1|EC976052
EST:     TAGGTTCAGAGGATTTAGCTGCCAACCATGATGTTATGCAAATAGTGGAG                         GTCTTGGATGATCGATCACGTGATGAACGTCTGCTCACTTTGTTAGGGAAA
genomic: TAGGTTCAGAGGATTTAGCTGCCAACCATGATGTTATGCAAATAGTGGAGgtataattta ... acatattcagGTCTTGGATGATCGATCACGTGATGAACGTCTGCTCACTTTGTTAGGGAAA
EST: gi|27587019|gb|CB009714.1|CB009714
EST:     TAGGTTCAGAGGATTTAGCTGCCAACCATGATGTTATGCAAATAGTGGAG                         GTCTTGGATGATCGATCACGTGATGAACGTCTGCTCACTTTGTTAGGGAAA
genomic: TAGGTTCAGAGGATTTAGCTGCCAACCATGATGTTATGCAAATAGTGGAGgtataattta ... acatattcagGTCTTGGATGATCGATCACGTGATGAACGTCTGCTCACTTTGTTAGGGAAA
EST: gi|161717360|gb|FC065275.1|FC065275
EST:     TAGGTTCAGAGGATTTAGCTGCCAACCATGATGTAATGCAAATAGTGGAG                         GTCTTGGATGATCGATCACGTGATGAACGTTTGCTCACTTTGTTAGGGAAA
genomic: TAGGTTCAGAGGATTTAGCTGCCAACCATGATGTTATGCAAATAGTGGAGgtataattta ... acatattcagGTCTTGGATGATCGATCACGTGATGAACGTCTGCTCACTTTGTTAGGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatatgaatagatcaatgccgcttgaattgacaacatatattttacatattcagGTCTTGGATGATCGATCACGTGATGAACGTCTGCTCACTTTGTTAGGGAAATACCACAAGTCCCAAAG
                          aattgac  putative branch site (score: 3)
                               acaacatatattttac  TA-rich tract