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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtggccattgaagtggtttttgcattctttgccattttcgggtcaatgtgctaatagcctaatacttattgacaatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATCATCAATGCAGCCTATGATTCATGGCAG

Basic information

species Vitis vinifera
transcript Vv02s0087g00400.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715153|gb|EE092874.1|EE092874
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110714669|gb|EE091838.1|EE091838
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCAGGCTTG                         TGTTTCTTCCCACAAAACATGGCACAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|30128817|gb|CB914156.1|CB914156
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110377757|gb|EC942842.1|EC942842
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|30251405|gb|CB969138.1|CB969138
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110391590|gb|EC956576.1|EC956576
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|18459501|gb|BM437779.1|BM437779
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110375405|gb|EC940389.1|EC940389
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|45770871|gb|CN006723.1|CN006723
EST:     AGACC-GGC-TG                         TG-TTC-TCCCAC-AAACA-GGCTCAACAGATC-AAACACCGC-TTTTATC
genomic: AGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110423673|gb|EC990024.1|EC990024
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACTGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110701134|gb|EE078400.1|EE078400
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCAGGCTTG                         TGTTTCTTCCCACAAAACATGGCACAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110360568|gb|EC923781.1|EC923781
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110364047|gb|EC927689.1|EC927689
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110361656|gb|EC925145.1|EC925145
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110382623|gb|EC946935.1|EC946935
EST:     AGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: AGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110375774|gb|EC940791.1|EC940791
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110362506|gb|EC926047.1|EC926047
EST:     CAGCAAAGAATCTGCCCCCATCGTGCACTTCAAGTATAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110396078|gb|EC961753.1|EC961753
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110692352|gb|EE071502.1|EE071502
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110369475|gb|EC933635.1|EC933635
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110715685|gb|EE094014.1|EE094014
EST:     AGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: AGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|110362390|gb|EC925920.1|EC925920
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTATAAGACCGGGCTTG                         TGTTTCCTACCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|45771174|gb|CN007026.1|CN007026
EST:     TCAAGTC-AAGACCGGGCTTG                         T-TTTCTTCCCACAAAACA-GGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: TCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|33410372|gb|CF215999.1|CF215999
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|18458990|gb|BM437268.1|BM437268
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|22012950|gb|BQ797984.1|BQ797984
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
EST: gi|351029203|gb|FQ435403.1|FQ435403
EST:     CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTG                         TGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC
genomic: CAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGCTTGgtgagtgtgg ... caatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgccattttcgggtcaatgtgctaatagcctaatacttattgacaatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATCATCAATGCAGCCTATGATTCATGGCAG
                                       tattgac  putative branch site (score: 2)
                                taatacttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgtggccattgaagtggtttttgcattctttgccattttcgggtcaatgtgctaatagcctaatacttattgacaatctgcagTGTTTCTTCCCACAAAACATGGCTCAACAGATCAAAACACCGCTTTTTATCATCAATGCAGCCTATGATTCATGGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA