Sequence
atgc intronic sequence ATGC exonic sequence...tttcttaatttatactcttatttacctataaaaaaagttaccaagtttatcaaagttcattgaattttcaaaatctcatttctggccataatatcatcagGTGGCTCCCAACGGATGGTCGGAGGGTGAATGCAAGGGCACGGCCGGATGGTTTCCCTCTGCTTATGTAGAAAGGCGTGACAAAGCTCCGGCCAGCGTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0087g00190.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G34950.1 (Glycine max), 3'ss of exon 10
----tttcttaatttatactcttatttacctataaaaaaagttaccaagttta--tcaaagttcattgaattttcaaaatctcatttctggccataatatcatcagGTGGCTCCCAACGGATGGTCGGAGGGTGAATGCAAGGGCACGGCCGGATGGTTTCCCTCTGCTTATGTAGAAAGGCGTGACAAAGCTCCGGCCAGCGTGA
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atgatcttttttttcagactttta---agttataatctttattgccaatatcagactgatttgagctgtatttttattatcc---ttttggttgttacatttctagGTTGGACCCAATGGATGGTCTGAAGGAGAATGCAAAGGCAATGCTGGATGGTTTCCCTCTGCTTATGTAGAGAGACAGGACATGATACCAGCCAGCAAGA
upper sequence: Vv02s0087g00190.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA01G35400.1 (Glycine max), 3'ss of exon 9
-tttcttaatttatactcttatttacctataaaaaaagttaccaagtttatcaaagttcattgaattttcaaaatctcat--ttctggccataatatcatcagGTGGCTCCCAACGGATGGTCGGAGGGTGAATGCAAGGGCACGGCCGGATGGTTTCCCTCTGCTTATGTAGAAAGGCGTGACAAAGCTCCGGCCAGCGTGA
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ttgtgatatttttttcagacattaagttataatctttattgccag---tatcagactgatttgagctgtatttgtattatccttttggttgttacatttccagGTTGGCCCCAATGGATGGTCTGAAGGAGAATGCAAAGGCAATGCTGGATGGTTTCCCTCTGCTTATGTACAGAGACAGGACATGATACCAGCCAGCAAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatcaaagttcattgaattttcaaaatctcatttctggccataatatcatcagGTGGCTCCCAACGGATGGTCGGAGGGTGAATGCAAGGGCACGGCCGGATGGTTTCCCTCTGCTTATGTAGAAAGGCGTGACAAAGCTCCGGCCAGCGTGA
attgaattttcaaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttcttaatttatactcttatttacctataaaaaaagttaccaagtttatcaaagttcattgaattttcaaaatctcatttctggccataatatcatcagGTGGCTCCCAACGGATGGTCGGAGGGTGAATGCAAGGGCACGGCCGGATGGTTTCCCTCTGCTTATGTAGAAAGGCGTGACAAAGCTCCGGCCAGCGTGA
- - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - ccaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcaaaa