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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttctgatgcctggaatatgaatgcatgcccaatcctgtatcttgattgttaacaaacttcatgtttgatatcagTTTTTCCTGGAGCTGATGAAGGTTCCACGAGTTGAATCCAAGTTGCGAGTATTTTCATTTAAAATAACCTTTTCAAGTCAG

Basic information

species Vitis vinifera
transcript Vv02s0033g01360.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G34830.1 (Glycine max), 3'ss of exon 9
--gtgatttctgatgcctggaatatgaatgcatgcccaatcctgtatcttgattgttaacaaacttcatgtttgatatcagTTTTTCCTGGAGCTGATGAAGGTTCCACGAGTTGAATCCAAGTTGCGAGTATTTTCATTTAAAATAACCTTTTCAAGTCAG
   |  |  ||||| |     |  | ||||  |    |||  | | | |||||| ||||||   ||  | | |   ||||||||||  |||||||||||||||||||||| || |||||||| ||  | || ||| | |||||||| ||||||||   ||||
gttttttccctgatactcttta-gtcaatgagttgttaattatttgtgttgatt-ttaaca---tttttttatctcatcagTTTTTTATGGAGCTGATGAAGGTTCCACGTGTGGAATCCAAATTAAGGGTTTTTGCTTTTAAAATCACCTTTTCTTCTCAG

upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA04G14770.1 (Glycine max), 3'ss of exon 9
--gtgatttctgatgcctggaatatgaatgcatgc---ccaatcctgtatcttgattgttaacaaacttcatgtttgatatcagTTTTTCCTGGAGCTGATGAAGGTTCCACGAGTTGAATCCAAGTTGCGAGTATTTTCATTTAAAATAACCTTTTCAAGTCAG
   |  |  ||||| |     |    ||||  | |   | |||  | ||| |||||| ||||||   ||  | | |   ||||||||||  ||||||| |||||||||||||| || |||||||| ||  | || ||| | |||||||| | ||||||   ||||
gttttttccctgatactctctagtcaaatgagtccttgctaattatttatgttgatt-ttaacattttttttttatctcatcagTTTTTTATGGAGCTCATGAAGGTTCCACGTGTGGAATCCAAATTAAGGGTTTTTGCTTTTAAAATCAACTTTTCTTCTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcatgcccaatcctgtatcttgattgttaacaaacttcatgtttgatatcagTTTTTCCTGGAGCTGATGAAGGTTCCACGAGTTGAATCCAAGTTGCGAGTATTTTCATTTAAAATAACCTTTTCAAGTCAG
                         attgttaa  TA-rich tract