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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatcttaaattatattcttggtggtggaatagtgttgtacacacttgtagttgctgagattgggatcctttctgatgctcacctaaatgtccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCTACTTTGCTACCCAAGCAAGTTGGCAACATGTACACTGCATCTCTCTATG

Basic information

species Vitis vinifera
transcript Vv02s0025g04580.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G32480.1 (Glycine max), 3'ss of exon 9
aatcttaaattatattcttggtggtggaatagtgttgtacacacttg--tagttgct-gagattgggatcc-------tttctgatgctcacctaaatgtccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCTACTTTGCTACCCAAGCAAGTTGGCAACATGTACACTGCATCTCTCTATG
       |  ||   |     || | |||| ||||| ||   |||    |  ||||| || ||||   |         ||| || |  |    | | |||   |||| |||||  ||| |||| |||||| |  |||||||||||||||||||| ||    ||  |  | || ||||||||||| |||||||||||||||||||| ||||
-----gtagctactcttgccatgtttgaattgtgttttattgactaaaatgattgctagaaattgaactttcaaatggtttgtgcttttgtggtcattgtgattctatagGCAAACCAGCAAGCTGCAAAACATCTATATGATGCAAAGGTGCAGCCCAGCACACTAATCCCAAAGCAAGTTGGTAACATGTACACTGCATCTCTTTATG

upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G27380.1 (Glycine max), 3'ss of exon 9
aatcttaaattatattcttggtggtggaatagtgttgtacacacttg--tagttgctgagattgggatc---ctttctgatgctc---accta-------aatgtccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCTACTTTGCTACCCAAGCAAGTTGGCAACATGTACACTGCATCTCTCTATG
       |  ||   |  |  || | || | ||||| ||   |||    |  |||||   ||||  ||    |||||  ||| ||    |||        | ||||   ||| |||||  ||| |||| |||||| |  |||||||||||||||||||| ||    ||  |  | || ||||||||||| |||||||||||||||||||| ||||
-----gtagctactcttgtcatgtttgatttgtgttttattgactaaaattattgctagaattgaaattgaactttcaaatggtctgtgcctttgtggtcattgtcatcctatagGCAAACCAGCAAGCTGCAAAACATCTATATGATGCAAAGGTGCAGCCCAGCACACTAATCCCAAAGCAAGTTGGTAACATGTACACTGCATCTCTTTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33403076|gb|CF208703.1|CF208703
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110696550|gb|EE072775.1|EE072775
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110362550|gb|EC926093.1|EC926093
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110390437|gb|EC955346.1|EC955346
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110412104|gb|EC977839.1|EC977839
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110697826|gb|EE075245.1|EE075245
EST:     AGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: AGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|33403214|gb|CF208841.1|CF208841
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110374042|gb|EC938533.1|EC938533
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|352777935|gb|FQ466988.1|FQ466988
EST:     CCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATTTGATGCAAAGGTGCAACCATCT
genomic: CCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|87584077|gb|DY473370.1|DY473370
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110718761|gb|EE095962.1|EE095962
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110357879|gb|EC921692.1|EC921692
EST:     TTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATC-TGNAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATC
genomic: TTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTG-AAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATC
EST: gi|110696636|gb|EE072924.1|EE072924
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110377475|gb|EC942541.1|EC942541
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|30251146|gb|CB968879.1|CB968879
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110376736|gb|EC941809.1|EC941809
EST:     GGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: GGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|45770657|gb|CN006509.1|CN006509
EST:     CAAAACC-GGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: CAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|34545354|gb|CF513586.1|CF513586
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|22011733|gb|BQ796767.1|BQ796767
EST:     TTTCAAG-TTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|22009851|gb|BQ794885.1|BQ794885
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATC-TGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|33401561|gb|CF207188.1|CF207188
EST:     GGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: GGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|33405731|gb|CF211358.1|CF211358
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110383242|gb|EC947601.1|EC947601
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|22007493|gb|BQ792527.1|BQ792527
EST:     TTTCAAG-TTATCCGGTGATGAGAGCTACCAAACCCGGGATCTTGAAAA-                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110369148|gb|EC933295.1|EC933295
EST:     CCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: CCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110361435|gb|EC924904.1|EC924904
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110730120|gb|EE106836.1|EE106836
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCCAAGGTGCCACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|30251503|gb|CB969236.1|CB969236
EST:     TTTCAAGTTTATCCGGGGATGAGAGCTACCAAAACCGGGAGATCGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110357104|gb|EC920414.1|EC920414
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|22015505|gb|BQ800539.1|BQ800539
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110361381|gb|EC924849.1|EC924849
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATAT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|33402990|gb|CF208617.1|CF208617
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|22012577|gb|BQ797611.1|BQ797611
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110379517|gb|EC944717.1|EC944717
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110717038|gb|EE092546.1|EE092546
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110363434|gb|EC927021.1|EC927021
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110373154|gb|EC937368.1|EC937368
EST:     TTC-AGTTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTCAAG-TTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110385868|gb|EC950425.1|EC950425
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|22011371|gb|BQ796405.1|BQ796405
EST:     TGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110361187|gb|EC924641.1|EC924641
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|161720421|gb|FC070201.1|FC070201
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110410530|gb|EC976213.1|EC976213
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110417178|gb|EC983212.1|EC983212
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|110378004|gb|EC943112.1|EC943112
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|30255107|gb|CB971554.1|CB971554
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
EST: gi|33403125|gb|CF208752.1|CF208752
EST:     TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAG                         GCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT
genomic: TTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGgtatatttgg ... ccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagttgctgagattgggatcctttctgatgctcacctaaatgtccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCTACTTTGCTACCCAAGCAAGTTGGCAACATGTACACTGCATCTCTCTATG
                                          tgtccctct  CT-rich tract
                                      taaatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatcttaaattatattcttggtggtggaatagtgttgtacacacttgtagttgctgagattgggatcctttctgatgctcacctaaatgtccctctacagGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCTACTTTGCTACCCAAGCAAGTTGGCAACATGTACACTGCATCTCTCTATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - -ggtggtg
- - - - - - - - - - - - - - - - - - -tacacac
- - - - - - - - - - - - - - - - - - - - - - - - - ttgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacctaa