Sequence
atgc intronic sequence ATGC exonic sequencegttatgtttcaggaaatttggatttcatatctacattgatttactatttggattttaaaccacttgctatttcatgcagAATGCTGGGACACGATCATTCTCCATAGGAATCACCGAGGTTCTTAATACAAACCTGTTGATTGAACTAAGTGCTGATGATATAGAATATGTATATCAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G38410.1 (Glycine max), 3'ss of exon 6
gttatgtttcaggaaatttggatttcatatctacattgat--ttactatttggattt-taaaccacttgctattt-catgcagAATGCTGGGACACGATCATTCTCCATAGGAATCACCGAGGTTCTTAATACAAACCTGTTGATTGAACTAAGTGCTGATGATATAGAATATGTATATCAGA
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gttacgttgcaataatgttgtattt-atatttaatatggtgtcttctattagaaattatttattttattttatttgtctgcagAGTGCTGGGAGTTATTCTTTCTCCATAGGAATTACAGAGGTTCTTAATACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAA
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA01G42590.1 (Glycine max), 3'ss of exon 4
gttatgtttcaggaaatttggatttcatatctacattgat--ttactatttgga---ttttaaaccacttgctatttcatgcagAATGCTGGGACACGATCATTCTCCATAGGAATCACCGAGGTTCTTAATACAAACCTGTTGATTGAACTAAGTGCTGATGATATAGAATATGTATATCAGA
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gttacgttgcaataatgttttgttt-atatttaatatggtggcttctattagaaatgatttattttattttatttgtc-tgcagAGTGCTGGGAGTTATTCTTACTCCATAGGAATTACAGAGGTTCTTAATACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAA
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G09670.1 (Glycine max), 3'ss of exon 11
gttatgtttcaggaaatttggatttcatatcta-cattg-atttactatttggattt-taaaccacttgctattt-catgcagAATGCTGGGACACGATCATTCTCCATAGGAATCACCGAGGTTCTTAATACAAACCTGTTGATTGAACTAAGTGCTGATGATATAGAATATGTATATCAGA
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gttacgttgcaataatgttgtattt-atatttaatatagtgtcttctattagaaattatttattttattttatttgtctgcagAGTGCTGGGAGTTATTCTTTCTCCATAGGAATTACAGAGGTTCTTAGTACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAA
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G09710.1 (Glycine max), 3'ss of exon 10
gttatgtttcaggaaatttggatttcatatcta-cattg-atttactatttggattt-taaaccacttgctattt-catgcagAATGCTGGGACACGATCATTCTCCATAGGAATCACCGAGGTTCTTAATACAAACCTGTTGATTGAACTAAGTGCTGATGATATAGAATATGTATATCAGA
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gttacgttggaataatgttgtattt-atatttaatatagtgtcttctattagaaattatttattttattttatttgtctgcagAGTGCTGGGAGTTATTCTTTCTCCATAGGAATTACAGAGGTTCTTAGTACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatatctacattgatttactatttggattttaaaccacttgctatttcatgcagAATGCTGGGACACGATCATTCTCCATAGGAATCACCGAGGTTCTTAATACAAACCTGTTGATTGAACTAAGTGCTGATGATATAGAATATGTATATCAGA
cattgat putative branch site (score: 4)
ctatttc putative PPT
atttactatttggatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttatgtttcaggaaatttggatttcatatctacattgatttactatttggattttaaaccacttgctatttcatgcagAATGCTGGGACACGATCATTCTCCATAGGAATCACCGAGGTTCTTAATACAAACCTGTTGATTGAACTAAGTGCTGATGATATAGAATATGTATATCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT