Sequence
atgc intronic sequence ATGC exonic sequence...tagaattattgttccaccagaatattcaaacagcaagcaaaactgtgttgccttttttaggacctttgaatataatcttgaggtttatttgattttgcagGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCTGTAGTTGTTAACACAAGGCTCTGGAAAAATATGGTACTCCAAGAATTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G144083_T01 (Zea mays), 3'ss of exon 3
------------tagaattattgt---tccaccagaatattcaaacagcaagcaaaactgtgttgccttttttaggacctttgaa-tata----atcttgaggtttatttgattttgcagGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCTGTAGTTGTTAACACAAGGCTCTGGAAAAATATGGTACTCCAAGAATTCT
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gtatgaaataatctcatctattgtgagggcgtgcaagtttttttcctttttaaaaaaggtcattgaattgttcagaaatgctaaactatctcatatgccatggtacttggtacttcgtagGTCGACTGCATCGTTTTTGACAAGACAGGGACGCTAACTATTGGGAAGCCTGTCGTTGTTGACACAAGGCTTCTCAAAAATATGGTCTTGCGTGAATTCT
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA01G42800.1 (Glycine max), 3'ss of exon 3
----tagaattattgttccaccagaatattcaaacagcaagcaaaactgtgttgccttttttaggacctttgaatataatcttgaggtttatttgattttgcagGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCTGTAGTTGTTAACACAAGGCTCTGGAAAAATATGGTACTCCAAGAATTCT
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cctacataaatttcactcaataacaaataatgtttagaaaagaacatgtttctagcattcctcgtaatatcaaattcactcacaa--cttac--gacattgcagGTGAATTGCATTGTGTTTGATAAGACAGGGACCCTCACAGTTGGGAAGCCAGTGGTTGTTACTACAAAACTCTTAAAAAAGACGTCACTTAGTAATTTCT
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G63440.1 (Arabidopsis thaliana), 3'ss of exon 3
-----------------------------tagaattattgttccaccagaatattcaaacagcaagcaaaa---ctgtgttgccttttttaggacctttgaatataatcttgaggtttatttgattttgcagGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCTGTAGTTGTTAACACAAGGCTCTGGAAAAATATGGTACTCCAAGAATTCT
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gttagtttagtgtgcagtaacttggtctatggctttgtaaacttactatactgtatatactttactcaggttctctggatcatttcttttctgaaat---ggtgaaacctgacagtttcaatgacggtgtagGTAAATTGCATTGTCTTTGACAAGACAGGAACTCTCACGATGGGGAAGCCCGTTGTTGTGAAAACAAAGCTCCTGAAAAACATGGTACTTCGAGAGTTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110728350|gb|EE103842.1|EE103842EST: ATTAGAAAGTGCACATAAG GTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCT
genomic: ATTAGAAAGTGCACATAAGgtcagtatgt ... gattttgcagGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttgccttttttaggacctttgaatataatcttgaggtttatttgattttgcagGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCTGTAGTTGTTAACACAAGGCTCTGGAAAAATATGGTACTCCAAGAATTCT
atttgat putative branch site (score: 5)
tttgaatataatctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagaattattgttccaccagaatattcaaacagcaagcaaaactgtgttgccttttttaggacctttgaatataatcttgaggtttatttgattttgcagGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCTGTAGTTGTTAACACAAGGCTCTGGAAAAATATGGTACTCCAAGAATTCT
- - - - - -ttccacc
- - - - - - - - - - - - -tcaaaca
- - - - - - - - - - - - - - - - - - gcaaaac