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...caagttatagatgaaatggttcaagatcaatattacaatgatatccctggctagcaaatgattgttcttctgacagcagtttgagtgttttgtgaatcagGTGGGTACAGTTCTTCTTAGTTGTGCCTTTTTGTACGACATCTTTTGGGTGTTCGTTTCTAAAAAGCTGTTCCATGAAAGTGTGATGATTGTG
species | Vitis vinifera |
transcript | Vv02s0025g03400.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGCACTAATTATCACAGTTTTTCAGATCGTACATATACCTAATCTCAAG GTGGGTACAGTTCTTCTTAGTTGTGCCTTTTTGTACGACATCTTTTGGGTGEST: gi|110362845|gb|EC926402.1|EC926402
genomic: TTGCACTAATTATCACAGTTCTTCAGATCGTACATATACCTAATCTCAAGgtaatgattc ... tgtgaatcagGTGGGTACAGTTCTTCTTAGTTGTGCCTTTTTGTACGACATCTTTTGGGTG
EST: TTGCACTAATTATCACAGTTCTTCAGATCGTACATATACCTAATCTCAAG GTGGGTACAGTTCTTCTTAGTTGTGCCTTTTTGTACGACATCTTTTGGGTGEST: gi|110716312|gb|EE091183.1|EE091183
genomic: TTGCACTAATTATCACAGTTCTTCAGATCGTACATATACCTAATCTCAAGgtaatgattc ... tgtgaatcagGTGGGTACAGTTCTTCTTAGTTGTGCCTTTTTGTACGACATCTTTTGGGTG
EST: TTGCACTAATTATCACAGTTCTTCAGATCGTACATATACCTAATCTCAAG GTGGGTACAGTTCTTCTTAGTTGTGCCTTTTTGTACGACATCTTTTGGGTGEST: gi|32246367|gb|CD712186.1|CD712186
genomic: TTGCACTAATTATCACAGTTCTTCAGATCGTACATATACCTAATCTCAAGgtaatgattc ... tgtgaatcagGTGGGTACAGTTCTTCTTAGTTGTGCCTTTTTGTACGACATCTTTTGGGTG
EST: CTAATCTCAAG GTGGGTACAGTTCTTCTTAGTTGTGCCTTTTTGTACGACATCTTTTGGGTG
genomic: CTAATCTCAAGgtaatgattc ... tgtgaatcagGTGGGTACAGTTCTTCTTAGTTGTGCCTTTTTGTACGACATCTTTTGGGTG
cctggctagcaaatgattgttcttctgacagcagtttgagtgttttgtgaatcagGTGGGTACAGTTCTTCTTAGTTGTGCCTTTTTGTACGACATCTTTTGGGTGTTCGTTTCTAAAAAGCTGTTCCATGAAAGTGTGATGATTGTG
ttctgac putative branch site (score: 2)
aaatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagttatagatgaaatggttcaagatcaatattacaatgatatccctggctagcaaatgattgttcttctgacagcagtttgagtgttttgtgaatcagGTGGGTACAGTTCTTCTTAGTTGTGCCTTTTTGTACGACATCTTTTGGGTGTTCGTTTCTAAAAAGCTGTTCCATGAAAGTGTGATGATTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - agatgaaa
- - - - - - - - - - - aagatcaa
- - - - - - - - - - - - - - - - - - - - - - ccctggc
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtgt