Sequence
atgc intronic sequence ATGC exonic sequencegtcagcctggttttcatttttgtactgttggtcactgttcttgacaatcctttctagtaacatatttgattgaatttatcattcagGTCATAAAGAACTCAAATGGCTGTAATCTTGCAGTCGATTTATGGAGTCTTGGGTGCACAGTTTTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 3'ss of exon 8
--------------------------gtcagcctggttttc------atttttgtactgttggtcactgttcttg-acaatcctttctagtaacatatttgattgaatttatcattcagGTCATAAAGAACTCAAATGGCTGTAATCTTGCAGTCGATTTATGGAGTCTTGGGTGCACAGTTTTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGT
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gtaatgaaaatcctacattcttctacacttctctagttatttgatgaatttatgcctatcttctctccgctGTTATAAAAATCAACCTTGCTTCTCTCACACATGTAATAACTATGCAGGTTATAAAAAATTCTAATGGATGTAATCTTGCTGTTGACATATGGAGCTTAGGATGCACGGTTTTAGAGATGGCTACCTCAAAACCACCATGGAGCCAAT
upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G093316_T01 (Zea mays), 3'ss of exon 8
--gtcagcctgg--ttttcatttttgtactgttggtcactgttcttgacaatcctttctagtaacatatttgattgaatt-----tatcattcagGTCATAAAGAACTCAAATGGCTGTAATCTTGCAGTCGATTTATGGAGTCTTGGGTGCACAGTTTTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGT
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gtattaccccaaatcttgcattgttctgctactt-tagttattttggccagatttatatatcctgacctttgcttatgttgtgacaaatatgcagGTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTAGGATGCACAGTCCTAGAGATGGCTACTTCAAAACCACCATGGAGCCAAT
upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AC209208.3_FGT001 (Zea mays), 3'ss of exon 7
--gtcagcctgg--ttttcatttttgtactg--ttggtcactgttcttgacaatcctttctagtaacatatttgattgaattt-----atcattcagGTCATAAAGAACTCAAATGGCTGTAATCTTGCAGTCGATTTATGGAGTCTTGGGTGCACAGTTTTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGT
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gtattgccccaaatcttgcattgtcccgctacattagttattttggttgg-gtttatatatcttgactttttttcttgtgttgtgacaaatatgcagGTTATAAAAAATGCTAGCGGATGTAACCTTGCAGTTGATATATGGAGTTTAGGATGCACAGTCCTAGAGATGGCTACTTCAAAACCACCATGGAGCCAAT
upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G01880.1 (Glycine max), 3'ss of exon 7
gtcagcctggttttcat-----ttttgtactgttggtcactgtt--cttgacaatcctttctagtaacatatttgattgaatttatcattcagGTCATAAAGAACTCAAATGGCTGTAATCTTGCAGTCGATTTATGGAGTCTTGGGTGCACAGTTTTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGT
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gtcagaatgatttctacatccattcaacactttttgttgcagatgctttgtctgtagtatattcttatctttgtcactgcctcaattacatagGTTATAAAAAATTCAAATGGTTGTAATCTTGCGGTTGATATATGGAGTCTAGGATGCACTGTTTTGGAGATGGCAACAACAAAACCTCCTTGGAGCCAAT
upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA11G02520.1 (Glycine max), 3'ss of exon 10
gtcagcctggttttcatttttgtactgttggtcactgttcttgacaatcctttctagtaacatatttgattgaatttatcattcagGTCATAAAGAACTCAAATGGCTGTAATCTTGCAGTCGATTTATGGAGTCTTGGGTGCACAGTTTTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGT
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gtcagtatgatttct-ttgttgagttttttgtaattgatgcttttgatgtaatattgtt---tgtgtcactgttttgattgtctagGTGATAAAGAATTCAAATGGTTGTAATCTTGCTGTTGATATATGGAGCCTTGGCTCCACCGTTTTCGAGATGGCTACTACAAAACCTCCTTGGAGCCAAT
upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA01G42960.1 (Glycine max), 3'ss of exon 7
gtcagcctggttttcatttttgtactgttggtcactgttcttgacaatcctt-tctagtaacatatttg--attgaatttatcattcagGTCATAAAGAACTCAAATGGCTGTAATCTTGCAGTCGATTTATGGAGTCTTGGGTGCACAGTTTTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGT
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gtcagtatgatttct-ttgttaacttgcatttttttgttattgatgcttttgatataatattgtttgtgtcactgctttgattgtctagGTGATAAAAAATTCAAATGGTTGTAATCTTGCTGTTGATATATGGAGCCTTGGCTCTACCGTTTTTGAGATGGCTACTACAAAACCTCCTTGGAGCCAAT
upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G63700.1 (Arabidopsis thaliana), 3'ss of exon 7
gtcagcctggttttcatttttgtactgttggtcactgttcttgacaatcctttctagtaacatatt-tgattgaatttatcattcagGTCATAAAGAACTCAAATGGCTGTAATCTTGCAGTCGATTTATGGAGTCTTGGGTGCACAGTTTTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGT
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gtcagtatgctgctacaacctgt-ctgtt--tcaatgtt---gacaggcgtta-tgctgatgctttattatcttgcttggatttcagGTGATAAAGAATTCAAATGGCAGTAACCTTGCGGTCGACATATGGAGTCTTGGATGTACTGTTTTAGAAATGGCTACAACGAAACCTCCATGGAGCCAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcactgttcttgacaatcctttctagtaacatatttgattgaatttatcattcagGTCATAAAGAACTCAAATGGCTGTAATCTTGCAGTCGATTTATGGAGTCTTGGGTGCACAGTTTTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGT
taacatatttgattga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagcctggttttcatttttgtactgttggtcactgttcttgacaatcctttctagtaacatatttgattgaatttatcattcagGTCATAAAGAACTCAAATGGCTGTAATCTTGCAGTCGATTTATGGAGTCTTGGGTGCACAGTTTTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG