1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttctgcgattcttttcaatgtggggttggattgaatctgaaattttctgtcatgccttttaatgtgggcttgaatgctaatgtttgtttgtttgttgcagATTATGGGAGATCATTCTCTGATGTTGTCCAAGGTCTGGAGCATATACTTGAGAATCTAGGGTTGGACCAAATTTCAACGCCCTCAAGTTTCAAATATAG
species | Vitis vinifera |
transcript | Vv02s0025g03050.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATCAGGATACAAGCTGCTGCTGCTTTGTCTGTGCCAGCATCAATTCTTG ATTATGGGAGATCATTCTCTGATGTTGTCCAAGGTCTGGAGCATATACTTGEST: gi|351027852|gb|FQ448422.1|FQ448422
genomic: GATCAGGATACAAGCTGCTGCTGCTTTGTCTGTGCCAGCATCAATTCTTGgtgagtcgta ... tttgttgcagATTATGGGAGATCATTCTCTGATGTTGTCCAAGGTCTGGAGCATATACTTG
EST: GATCAGGATACAAGCTGCTGCTGCTTTGTCTGTGCCAGCATCAATTCTTG ATTATGGGAGATCATTCTCTGATGTTGTCCAAGGTCTGGAGCATATACTTG
genomic: GATCAGGATACAAGCTGCTGCTGCTTTGTCTGTGCCAGCATCAATTCTTGgtgagtcgta ... tttgttgcagATTATGGGAGATCATTCTCTGATGTTGTCCAAGGTCTGGAGCATATACTTG
tctgtcatgccttttaatgtgggcttgaatgctaatgtttgtttgtttgttgcagATTATGGGAGATCATTCTCTGATGTTGTCCAAGGTCTGGAGCATATACTTGAGAATCTAGGGTTGGACCAAATTTCAACGCCCTCAAGTTTCAAATATAG
tgctaat putative branch site (score: 2)
tttgttt putative PPT
ttttaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgcgattcttttcaatgtggggttggattgaatctgaaattttctgtcatgccttttaatgtgggcttgaatgctaatgtttgtttgtttgttgcagATTATGGGAGATCATTCTCTGATGTTGTCCAAGGTCTGGAGCATATACTTGAGAATCTAGGGTTGGACCAAATTTCAACGCCCTCAAGTTTCAAATATAG
- - - - - - - -caatgtg
- - - - - - - - - - - gggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - tgccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgct