1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtctggtccaggtctgattgatatggtcctaaccactgtgtattatattccatatctaagtccatcacatctgattactttcttggtattcttttacagAGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACTCTTAATACTCCCATCATTGTCTTTACAAGAACTGGATCCATGGCTATAA
species | Vitis vinifera |
transcript | Vv02s0012g01170.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTAGTCTATCAACCAGCACAACTCCTCCAAGTCAAACTATACCCTACAAG AGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACTEST: gi|27586266|gb|CB008961.1|CB008961
genomic: CTAGTCTATCAACCAGCACAACTCCTCCAAGTCAAACTATACCCTACAAGgcaagtattg ... tcttttacagAGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACT
EST: CTAGTCTATCAACCAGCACAACTCCTCCAAGTCAAACTATACCCTACAAG AGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACTEST: gi|110388166|gb|EC952886.1|EC952886
genomic: CTAGTCTATCAACCAGCACAACTCCTCCAAGTCAAACTATACCCTACAAGgcaagtattg ... tcttttacagAGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACT
EST: CTAGTCTATCAACCAGCACAACTCCTCCAAGTCAAACTATACCCTACAAG AGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACTEST: gi|30131201|gb|CB916540.1|CB916540
genomic: CTAGTCTATCAACCAGCACAACTCCTCCAAGTCAAACTATACCCTACAAGgcaagtattg ... tcttttacagAGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACT
EST: CTAGTCTATCAACCAGCACAACTCCTCCAAGTCAAACTATACCCTACAAG AGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACT
genomic: CTAGTCTATCAACCAGCACAACTCCTCCAAGTCAAACTATACCCTACAAGgcaagtattg ... tcttttacagAGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACT
atattccatatctaagtccatcacatctgattactttcttggtattcttttacagAGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACTCTTAATACTCCCATCATTGTCTTTACAAGAACTGGATCCATGGCTATAA
atctgat putative branch site (score: 4)
tattctttt putative PPT
tattctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtctggtccaggtctgattgatatggtcctaaccactgtgtattatattccatatctaagtccatcacatctgattactttcttggtattcttttacagAGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACTCTTAATACTCCCATCATTGTCTTTACAAGAACTGGATCCATGGCTATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
tgtctgg
- - - - ccaggtc
- - - - - - - - - - - - - - cctaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatcac