Sequence
atgc intronic sequence ATGC exonic sequence...tggctcatgcatttctatgaatttgagattaagttcattttgtctcagttatatagttaaagaaattttatttgttttttttttactttgtgagaaacagCTAGTAGTTATGATGCCTGTACCTTCGGCTACTGTCTTTGCAAGGAGAGCCCTCTCATACTTGATGATTGGACAAGCAGAACTTGCCTTGAGGGATGCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g01140.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA17G16420.1 (Glycine max), 3'ss of exon 9
----------------------------------tggctcatgcatttctatgaatttgagattaag--ttcattttgtctcagttatatagttaaa----gaaatttta-tttgttttttttttactttgtgaga--aacagCTAGTAGTTATGATGCCTGTACCTTCGGCTACTGTCTTTGCAAGGAGAGCCCTCTCATACTTGATGATTGGACAAGCAGAACTTGCCTTGAGGGATGCCA
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gtagattcactgtttcacttttcttttttttaaccggttttggcttattgattgtctcaatataaaaatctcaatatgttcttaagatatattcctattctgaagtcatagtctgactgccctttatttctttgcattaacagTTGGTGGTTATGATGTCTGTTCCTTCTGCTACTGTGTTTGCAAGGAGAGCCTTCTCCTACTTGATGAATGATCAAGCAGAACTTGCATTAAGAGATGCCA
upper sequence: Vv02s0012g01140.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA05G06140.1 (Glycine max), 3'ss of exon 9
-----------------------------------tggctcatgcatttctatgaatttgagattaagttcattttgtctca-gttatatagttaaa--gaaatttta--tttgttttttttttactttgtgagaaacagCTAGTAGTTATGATGCCTGTACCTTCGGCTACTGTCTTTGCAAGGAGAGCCCTCTCATACTTGATGATTGGACAAGCAGAACTTGCCTTGAGGGATGCCA
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gtagattctctgtttcacctttttttaactggttttggcttattggttgcctcaaaatgttcataatctcaatatgttcttaaggtatattcctattctgaagtcatagtctgagccctttatttctttgcattaagcagTTGGTGGTTATGATGTCTGTTCCTTCTGCTACTGTGTTTGCAAGGAGAGCCTTCTCCTACTTGATGAACGATCAAGCAGAACTGGCATTAAGGGATGCCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagttatatagttaaagaaattttatttgttttttttttactttgtgagaaacagCTAGTAGTTATGATGCCTGTACCTTCGGCTACTGTCTTTGCAAGGAGAGCCCTCTCATACTTGATGATTGGACAAGCAGAACTTGCCTTGAGGGATGCCA
tttgttttttttttac CT-rich tract
atatagttaaagaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggctcatgcatttctatgaatttgagattaagttcattttgtctcagttatatagttaaagaaattttatttgttttttttttactttgtgagaaacagCTAGTAGTTATGATGCCTGTACCTTCGGCTACTGTCTTTGCAAGGAGAGCCCTCTCATACTTGATGATTGGACAAGCAGAACTTGCCTTGAGGGATGCCA
- -ctcatgc
- - - - - - - ctatgaa
- - - - - - - - - - - - - - - - - - - - tgtctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa