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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcaagtgtggttattttgttaatactggttttcaattttacatcttctaagtttttcttgctaattttaatttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCATTTGTACATTTTCATTCG

Basic information

species Vitis vinifera
transcript Vv02s0012g00870.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g00870.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G35510.1 (Glycine max), 3'ss of exon 9
----------------------------------gtactcaagtgtggttat--tttgttaatactggttttcaattttacatcttctaagttttt--cttgctaattttaat-----ttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCATTTGTACATTTTCATTCG
                                      |  | | ||  |||   |||      | || ||    || |  || ||   | || |   ||   || | ||| |     || |||||||| || |||||  |||| || || |||||||| ||||||||||||||||||||||| ||| |||||
gttaggttactaaattgttgagctagttaactaatccttttactatgcctatgcattggaggggcagggttgttcttgtttatgttgccatttatatgctaagtagtgttattatctattacagGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCG

upper sequence: Vv02s0012g00870.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G18030.1 (Glycine max), 3'ss of exon 9
------------------------------gtactcaagtgtggttatt--ttgttaatactggttttcaattttacatcttctaagttttt--cttgctaattttaat-----ttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCATTTGTACATTTTCATTCG
                                  |  | | || ||||   ||| |    | || ||    || |  || ||  || || |   ||   || | ||  |     || |||||||| || |||||  |||| || || |||||||| ||||||||||||||||||||||| ||| |||||
gtttgattactagttgagctagttaattaatccttttactatgtttatgcattggtggggcagggttgttcttgtttatgttgcaatttatatgctaagtagtgttgttatctattacagGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCG

upper sequence: Vv02s0012g00870.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT3G54230.2 (Arabidopsis thaliana), 3'ss of exon 11
------gtactcaagtgtggttattttgttaatactggttttcaattttacatctt--ctaa---gtttttcttgctaattttaatttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCATTTGTACATTTTCATTCG
        |  |   | ||| |   ||||  ||   | | ||  | |||| || |    | |   | ||||| |  |      | |||| |||||||||| |||||  |||| |||||||||||||| ||| | ||||||||||| || |||||  |||||
gttaacaaaaacccttttggattcgttgtctattaagatattgtactttatatgtcagttgacctggttttcctctttccgccattttgtagGATCTTCGTCTTGTGAGAGACAAATTCACTCATGTTTCACGAGGATTTGCATTCGTGCATTTCTATTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352774159|gb|FQ474682.1|FQ474682
EST:     CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAG                         GATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA
genomic: CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgtactcaagt ... taatttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA
EST: gi|352772792|gb|FQ473830.1|FQ473830
EST:     CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAG                         GATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA
genomic: CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgtactcaagt ... taatttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA
EST: gi|352764157|gb|FQ467727.1|FQ467727
EST:     CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAG                         GATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA
genomic: CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgtactcaagt ... taatttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA
EST: gi|28962295|gb|CB341328.1|CB341328
EST:     CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAG                         GATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA
genomic: CTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgtactcaagt ... taatttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactggttttcaattttacatcttctaagtttttcttgctaattttaatttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCATTTGTACATTTTCATTCG
                             tttttcttgctaattt  TA-rich tract