Sequence
atgc intronic sequence ATGC exonic sequencegtttgtagcagcacaattttgattacgagaaccattaatgtatgtaagaattcaaacacagctgaactttttatctcaaaatgagctacagGCTGTACTGACCAGCATAGTTTTGAAGCGGAATGTCACCATGCTAGATATAGTTAGTACGCGGATGCTTGGTCAATTTGGCTTCCTTGCAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA19G27500.1 (Glycine max), 3'ss of exon 8
gtttgtagcagcacaattttgattacgagaa-----ccattaatgtatgtaagaattcaaacacagctgaactttttatctcaaaatgagctacagGCTGTACTGACCAGCATAGTTTTGAAGCGGAATGTCACCATGCTAGATATAGTTAGTACGCGGATGCTTGGTCAATTTGGCTTCCTTGCAAAG
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gtttgtataattgagccttggcatagaggaaaaatacaattatttgaaggatgattttagacactgttaagttttcctatttgtgct----tgcagGCATTATTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAG
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G26300.1 (Glycine max), 3'ss of exon 10
gtttgtagcagca-----caattttgattacgagaaccattaatgtatgtaagaattcaaacacagctgaactttttatctcaaaatgagctacagGCTGTACTGACCAGCATAGTTTTGAAGCGGAATGTCACCATGCTAGATATAGTTAGTACGCGGATGCTTGGTCAATTTGGCTTCCTTGCAAAG
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gtttgtagaattaagtgttggcataaatagtaaatcccattatctcaagtaaga-ttcaggcaatgctataagtcttccttttctac---ctccagGCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATAGTGAGTACTCGCATGCTTGGTCAGTATGGTTTCCTTGCTAAG
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G05380.1 (Glycine max), 3'ss of exon 8
gtttgtagcagcacaattttg-----attacgagaaccattaatgtatgtaagaattcaaacacagctgaactttttatctcaaaatgagctacagGCTGTACTGACCAGCATAGTTTTGAAGCGGAATGTCACCATGCTAGATATAGTTAGTACGCGGATGCTTGGTCAATTTGGCTTCCTTGCAAAG
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gtttgtatcgttgagccttggcataaatgaaaaatacgattatctgaaggatgattttagacactgttatgttttcctatttgtgct----tgcagGCATTATTAACTAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatgtatgtaagaattcaaacacagctgaactttttatctcaaaatgagctacagGCTGTACTGACCAGCATAGTTTTGAAGCGGAATGTCACCATGCTAGATATAGTTAGTACGCGGATGCTTGGTCAATTTGGCTTCCTTGCAAAG
cattaat putative branch site (score: 3)
tttttatctcaaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtagcagcacaattttgattacgagaaccattaatgtatgtaagaattcaaacacagctgaactttttatctcaaaatgagctacagGCTGTACTGACCAGCATAGTTTTGAAGCGGAATGTCACCATGCTAGATATAGTTAGTACGCGGATGCTTGGTCAATTTGGCTTCCTTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG