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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatttctaaaataattcatgtttgagctccagctccgtagctgctggattaaattctatattgtaaaatgcagTGGCCATACGGTGTATAATCCGAACCTTCTCAAATACTCCTGCCAAATCGAATGCAG

Basic information

species Vitis vinifera
transcript Vv01s0244g00110.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0244g00110.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G33920.1 (Glycine max), 3'ss of exon 9
gtagatttctaaaataattcat---gtttgagctccagctccgtagctgctgg---------attaa--attctatattgt----aaaatgcagTGGCCATACGGTGTATAATCCGAACCTTCTCAAATACTCCTGCCAAATCGAATGCAG
||| |||  |  || ||  |||   ||      |   |  ||  ||      |         | |||  ||   | |||||    ||  || |||||   ||| | ||||||||| ||||| ||||||||||| ||||| || ||||||||
gtaaattagtgcaagaagccattatgtccacaatatggtaccaaagtcttcagttttccattactaatgatcacaaattgttccaaatttgtagTGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110381547|gb|EC934750.1|EC934750
EST:     CCCGAGAAGTGGATGGGGCCAGCTATCAAAATGTCGCTTCCAAGCTTTAG                         TGGCCATACGGTGTATAATCCGAACCTTCTCAAATACTCCTGCCAAATCGA
genomic: CCCGAGAAGTGGATGGGGCCAGCTATCAAAATGTCGCTTCCAAGCTTTAGgtagatttct ... taaaatgcagTGGCCATACGGTGTATAATCCGAACCTTCTCAAATACTCCTGCCAAATCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgagctccagctccgtagctgctggattaaattctatattgtaaaatgcagTGGCCATACGGTGTATAATCCGAACCTTCTCAAATACTCCTGCCAAATCGAATGCAG
                             attaaattctatattg  TA-rich tract