1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttgcatttttgtttagagcagacaatgcatttgccttcaacgaaattctttcattgattggaggttttgatcttataatgattattctactttggacagGGAGAAGTTATTTCAATGGCAAGGAAAGCTTCAAGTGAACTTCTGAAGAGGGCGGGCATTAGAATTCCTAAGAGAATGAATATGATTTGATAGTTGTTTC
species | Vitis vinifera |
transcript | Vv01s0146g00170.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCAATGGCCAGTGGATCATGAAGGATGGAAAGATCTTGAACGTGAATGAG GGAGAAGTTATTTCAATGGCAAGGAAAGCTTCAAGTGAACTTCTGAAGAGGEST: gi|30124970|gb|CB910309.1|CB910309
genomic: GCAATGGCCAGTGGATCATGAAGGATGGAAAGATCTTGAACGTGAATGAGgtattttgta ... ctttggacagGGAGAAGTTATTTCAATGGCAAGGAAAGCTTCAAGTGAACTTCTGAAGAGG
EST: GCAATGGCCAGTGGATCATGAAGGATGGAAAGATCTTGAACGTGAATGAG GGAGAAGTTATTTCAATGGCAAGGAAAGCTTCAAGTGAACTTCTGAAGAGG
genomic: GCAATGGCCAGTGGATCATGAAGGATGGAAAGATCTTGAACGTGAATGAGgtattttgta ... ctttggacagGGAGAAGTTATTTCAATGGCAAGGAAAGCTTCAAGTGAACTTCTGAAGAGG
attctttcattgattggaggttttgatcttataatgattattctactttggacagGGAGAAGTTATTTCAATGGCAAGGAAAGCTTCAAGTGAACTTCTGAAGAGGGCGGGCATTAGAATTCCTAAGAGAATGAATATGATTTGATAGTTGTTTC
ttttgat putative branch site (score: 4)
ttctacttt putative PPT
ttttgatcttataatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgcatttttgtttagagcagacaatgcatttgccttcaacgaaattctttcattgattggaggttttgatcttataatgattattctactttggacagGGAGAAGTTATTTCAATGGCAAGGAAAGCTTCAAGTGAACTTCTGAAGAGGGCGGGCATTAGAATTCCTAAGAGAATGAATATGATTTGATAGTTGTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - -caatgca
- - - - - - - - - - - - - - - - -gccttca