Sequence
atgc intronic sequence ATGC exonic sequencegtaagaataaacattaacaccaaagttccctttcatttgttacttattatagattaatggaatgaccttttctccttgtttttccccaatttttctaccagAGAAACAGAGGAGAAACCGGGCTGGTGCCCTAACCCACATTTGCCTCCCTGTGCAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G14040.1 (Glycine max), 3'ss of exon 9
gtaagaataaacattaacaccaaagttccctttcatttgttacttattatagattaatggaatgaccttttctccttgtttttccccaatttttctaccagAGAAACAGAGGAGAAACCGGGCTGGTGCCCTAACCCACATTTGCCTCCCTGTGCAGC
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gtaaga-caagaat-----cctgtgttagttttcttctggaacttgttttg---taaaagaatg---tgtactaactgtttatttttgtgatttctattagAGAAACAGAGGAGAAACCAGGATGGTGCGCTGACCCCCATCTGCCTCCTTGTGCAGC
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA05G30830.1 (Glycine max), 3'ss of exon 9
gtaagaataaacattaacaccaaagttccctttcatttgttacttattatagattaatggaatgaccttttctccttgtttttccccaatttttctaccagAGAAACAGAGGAGAAACCGGGCTGGTGCCCTAACCCACATTTGCCTCCCTGTGCAGC
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gtaagacaagaatcttgtgtta--gttttcttctggtacttgttttgtaaaagaatgtgtactaactgttttttttttttttt------tatttctattagAGAAACAGAGGAGAAACCAGGATGGTGCAGTGACCCCCATCTGCCTCCTTGTGCAGC
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 9
gtaagaataaacattaacaccaaagttccctttcatttgttacttattatagattaatggaatgaccttttctccttgtttttccccaatttttctaccagAGAAACAGAGGAGAAACCGGGCTGGTGCCCTAACCCACATTTGCCTCCCTGTGCAGC
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gtaagaatga----ttggagtgctgcaccagttttatggcagttcatgttattttaaagaatgtgcatttactgtttattttcttgta---tttctgttagAGTGACAGAGGAGAAACCAGGATGGTGTTCTGACCCTCATTTGCCTCCTTGTGCAGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatagattaatggaatgaccttttctccttgtttttccccaatttttctaccagAGAAACAGAGGAGAAACCGGGCTGGTGCCCTAACCCACATTTGCCTCCCTGTGCAGC
gattaat putative branch site (score: 3)
ccttttctccttgttt putative PPT
aatttttcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagaataaacattaacaccaaagttccctttcatttgttacttattatagattaatggaatgaccttttctccttgtttttccccaatttttctaccagAGAAACAGAGGAGAAACCGGGCTGGTGCCCTAACCCACATTTGCCTCCCTGTGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA