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...ccacctgttacattcttatgtaacttgcagttgcatctgtggtttatgtttttcccatagttgttggcttgagcatatgctaacctaattttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTG
species | Vitis vinifera |
transcript | Vv01s0026g01700.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATGGGAAGATAGGTTCATTGGAATATAAGCAG AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGAEST: gi|110693432|gb|EE069656.1|EE069656
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: GATGGGAAGATAGGTTCATTGGAATATAAGCAG AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGAEST: gi|161717886|gb|FC065984.1|FC065984
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: GATGGGAAGATAGGTTCATTGGAATATAAGCAG AATTTTGCAGTTGAGGGTGTGGTGTACCEST: gi|110379389|gb|EC944580.1|EC944580
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACC
EST: GATGGGAAGATAGGTTCATTGGAATATAAGCAG AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGAEST: gi|46910317|gb|CN545692.1|CN545692
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: GATGGGAAGATAGGTTCATTGGAATATAAGCAG AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGAEST: gi|71884005|gb|DT033060.1|DT033060
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: GATGGGAAGATAGGTTCATTGGAATATAAGCAG AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGEST: gi|71884658|gb|DT033713.1|DT033713
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTG
EST: GATGGGAAGATAGGTTCATTGGAATATAAGCAG AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGAEST: gi|110722964|gb|EE099738.1|EE099738
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: GATGGGAAGATAGGTTCATTGGAATATAAGCCG AATTTTGCAATTGAGGGTGTGGTGTACCTGTGCAATGCTGTTAAAGGAAGAEST: gi|110396076|gb|EC961751.1|EC961751
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: GATGGGAAGATAGGTTCATTGGAATATAAGCAG AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGAEST: gi|110361687|gb|EC925180.1|EC925180
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: GATGGGAAGATAGGTTCATTGGAATATAAGCAG AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGAEST: gi|22011799|gb|BQ796833.1|BQ796833
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: GATGGGAAGATAGGTTCATTGGAATATAAGCAG AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGAEST: gi|110713393|gb|EE089276.1|EE089276
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
EST: GATGGGAAGATAGGTTCATTGGAATATAAGCAG AATTTTGCAGTTGAAGGTGTGGTGTACCTGTGCAATGCTGTTAEST: gi|46918277|gb|CN547606.1|CN547606
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTA
EST: GATGGGAAGATAGGTTCATTGGAATATAAGCAG AATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
genomic: GATGGGAAGATAGGTTCATTGGAATATAAGCAGgtgaaatacc ... ttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGA
atgtttttcccatagttgttggcttgagcatatgctaacctaattttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTG
taatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacctgttacattcttatgtaacttgcagttgcatctgtggtttatgtttttcccatagttgttggcttgagcatatgctaacctaattttggcaacagAATTTTGCAGTTGAGGGTGTGGTGTACCTGTGCAACGCTGTTAATGGAAGAAGTGTACCAATGTCTGAAACTATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
-cacctgt
- - - - - - - - - - - - -tgcagtt
- - - - - - - - - - - - - - - - gcatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacctaa