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...catttttacagcagccattttcctccctaagcttttctgacaatcttttgcctaataatatctgtttgtaagttactaaaaacatgcttatgcatcccagGCTCTGGATCGTGCTAAGCCAGATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTG
species | Vitis vinifera |
transcript | Vv01s0011g05400.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGGGTTTCATGCACACTCGGATGAGACGTCGCGTGGAGTCCCTTATTCAG GCTCTGGATCGTGCTAAGCCAGATTTGGAGAAATCGAAGAAAACTGCACAAEST: gi|110361352|gb|EC924819.1|EC924819
genomic: AGGGTTTCATGCACACTCGGATGAGACGTCGCGTGGAGTCCCTTATTCAGgtaaggtttt ... tgcatcccagGCTCTGGATCGTGCTAAGCCAGATTTGGAGAAATCAAAGAAAACTGTACAA
EST: AGGGTTTCATGCACACTCGAATGAGACGTCGCGTGGAGTCCCTTATTCAG GCTCTGGATCGTGCTAAGCCAGATTTGGAGAAATCAAAGAAAACTGTACAAEST: gi|110362276|gb|EC925797.1|EC925797
genomic: AGGGTTTCATGCACACTCGGATGAGACGTCGCGTGGAGTCCCTTATTCAGgtaaggtttt ... tgcatcccagGCTCTGGATCGTGCTAAGCCAGATTTGGAGAAATCAAAGAAAACTGTACAA
EST: AGGGTTTCATGCACACTCGAATGAGACGTCGCGTGGAGTCCCTTATTCAG GCTCTGGATCGTGCTAAGCCAGATTTGGAGAAATCAAAGAAAACTGTACAA
genomic: AGGGTTTCATGCACACTCGGATGAGACGTCGCGTGGAGTCCCTTATTCAGgtaaggtttt ... tgcatcccagGCTCTGGATCGTGCTAAGCCAGATTTGGAGAAATCAAAGAAAACTGTACAA
ttttgcctaataatatctgtttgtaagttactaaaaacatgcttatgcatcccagGCTCTGGATCGTGCTAAGCCAGATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTG
tactaaa putative branch site (score: 1)
taataatatctgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttttacagcagccattttcctccctaagcttttctgacaatcttttgcctaataatatctgtttgtaagttactaaaaacatgcttatgcatcccagGCTCTGGATCGTGCTAAGCCAGATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - gcagcca
- - - - - - - - - - tcctccc
- - - - - - - - - - - - - - - - - - ctgacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaca