Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcaaaatttttgaaaggtttctgtttcttcattgcattttctagtatcccctgtcactaattttttgtttctttttcaaatattaactagGATGCACTCAGAGCTACTGATTTCAAGGATTATAGCCCACAAACTCAGGAATCTTTGTCCTGTTGGAATCCTGACTGCATTGGTTTTAACCTCATAGAAA

Basic information

species Vitis vinifera
transcript Vv01s0011g04360.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G25800.1 (Glycine max), 3'ss of exon 12
gtattcaaaatttttgaaaggtttctgtttcttcattgcattttctagtatcccctgtcactaattttttgtttctttttcaaatat-taactagGATGCACTCAGAGCTACTGATTTCAAGGATTATAGCCCACAAACTCAGGAATCTTTGTCCTGTTGGAATCCTGACTGCATTGGTTTTAACCTCATAGAAA
||||| |  |  ||   ||   | | ||| |||   ||     | || |||   ||     ||||||    |   |||   |||| | | || |||||||| | |  ||  |||||||||| ||||| |||| ||| || ||||| |||||||| ||||||||||||||||| ||||||||||  ||||||||| 
gtatttatgaaattcagaa--ctgcagttgcttacctg-----tttaatattttct-----taatttaagttcattttggaaaatgtatgaccagGATGCAATTATGGCAGCTGATTTCAAAGATTACAGCCTACAGACACAGGAGTCTTTGTCGTGTTGGAATCCTGACTGTATTGGTTTTAGTCTCATAGAAT

upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G18490.1 (Glycine max), 3'ss of exon 4
gtattcaaaatttttgaaaggtttctgtttcttcattgcattttctagtatcccctgtcactaattttttgtttctttttcaaatattaactagGATGCACTCAGAGCTACTGATTTCAAGGATTATAGCCCACAAACTCAGGAATCTTTGTCCTGTTGGAATCCTGACTGCATTGGTTTTAACCTCATAGAAA
||||| |||  || | ||  | | | ||  || |||| |   ||  | | |      | | ||| ||  |     ||    |||||||| | |||||||| |  ||||  ||||||| |  |||||||| |  |||||   ||| |||||||| |||||| |||||||||| |||||||||||||||||  || 
gtatttaaagattctcaa--gctacagtcactccattcc---ttgcaatgtat----ttattaagttcat----tttggaaaaatatta-ccagGATGCATTACGAGCGGCTGATTTAAGTGATTATAGTCTGCAAACAAGGGAGTCTTTGTCTTGTTGGTATCCTGACTGTATTGGTTTTAACCTCATTCAAT

upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT2G01130.1 (Arabidopsis thaliana), 3'ss of exon 9
gtattcaaaatttttgaaaggtttctgtttcttcattgcattttctagtatcccctgtcactaattttttgtttctttttcaaatattaactagGATGCACTCAGAGCTACTGATTTCAAGGATTATAGCCCACAAACTCAGGAATCTTTGTCCTGTTGGAATCCTGACTGCATTGGTTTTAACCTCATAGAAA
||||  | ||      ||   | || |   ||| | |  |  |  |||        |||   | || ||| |  ||| | |||| |       ||| ||||| |||||  |||| |||||||| | ||||||  | ||||  || ||||| || |||||| ||||||| |||||||||||||||||||||||| 
gtatctagaa-----aaagaatatcagcagcttaactctacatgttag--------gtcctcatttctttttcccttatgcaaaca-------gGACGCACTGAGAGCAGCTGACTTCAAGGAGTTTAGCCCTGAGACTCGAGAGTCTTTATCTTGTTGGTATCCTGATTGCATTGGTTTTAACCTCATAGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttctagtatcccctgtcactaattttttgtttctttttcaaatattaactagGATGCACTCAGAGCTACTGATTTCAAGGATTATAGCCCACAAACTCAGGAATCTTTGTCCTGTTGGAATCCTGACTGCATTGGTTTTAACCTCATAGAAA
                   cactaat  putative branch site (score: 2)
                    actaattttttgtttc  TA-rich tract