Sequence
atgc intronic sequence ATGC exonic sequencegtaatgcttatttttaagcatctaaaaaattttgtatgagcaatatggatccttattggaccaacaaaaactagaaaaattgtgcaattgctgctttgtaattgggaaaattatatgactcattcctgttaacagGTTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAAGAACAGGCTCGACTTTATTACGCTGGGGCATCTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g02950.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G32670.1 (Glycine max), 3'ss of exon 9
gtaat-gcttatttttaagcatctaaaaaattttgtatgagcaatatggatcct-tattggaccaacaaaaactagaaaaattgtgcaattgctgctttgtaattgggaaaattatatgactcattcctgttaacagGTTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAAGAACAGGCTCGACTTTATTACGCTGGGGCATCTGG
||| | ||| | | | ||| |||| | || | ||| || || || || | ||||||| || || || || | ||| | || || | ||| |||||||||||||||||||||||||||| |||||||||||| |||| ||| | ||| |||||| || |||||| ||||
gtatcagtttagatgtgattggctagaaaaaggaatttgtcttcagtagattctctactgaacttagaaaaacttctcaagtttctgaactgacatggactgtttgtca---ttgcctgcactttccctcttaacagGTTGCTTGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAAGCTAGACTTTTTTGTGCTGGGAGTCCTGG
upper sequence: Vv01s0011g02950.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G34710.1 (Glycine max), 3'ss of exon 9
gta-atgcttatttttaagcatctaaaaaattttgtatgagcaatatggatcct-tattggaccaacaaaaactagaaaaattgtgcaattgctgctttgtaattgggaaaattatatgactcattcctgttaacagGTTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAAGAACAGGCTCGACTTTATTACGCTGGGGCATCTGG
||| | | ||| | | | ||| |||| | || | ||| || || || || | ||||||| |||||| | | | ||| || | ||| || | ||| |||||||||||||||||||||||||||| |||||||||||| |||| ||| | ||| |||||| || |||||| ||||
gtataagtttacatctgattggctagaaaaaagaatttgtcttcggtagattctctactgaacttagaaaaacttgaaaaagtttatga--actgacatggacagtttttcattgcctgcactttccctcttaacagGTTGCTTGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAAGCTAGACTTTTTTGTGCTGGGAGTCCTGG
upper sequence: Vv01s0011g02950.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G68820.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaatgcttatttttaagcatctaaaaaattttgtatgagcaatatggatccttattgga--ccaacaaaaactagaaaaattgtgcaattgctgctttgtaattgggaaaattatatgactcattcctgttaacagGTTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAAGAACAGGCTCGACTTTATTACGCTGGGGCATCTGG
| | ||| || | ||| | | ||| || | | | | | | ||| | || || | | ||| | |||| || ||||| |||||||| || |||||||||||||| |||||||| || | || || | | | || ||||
-----------------------------------------------gtacgttagcagaaacgaactatacataggaatctatggggaataagtcctcctaagtactaatctt---tctcatattgtaaatcacagATTACTTGGCTGGTGGTCTATCGATGAAGGAAGTCGGGAAGAACAAGCAAGGCTCTACTCTGGAGAAGCTACTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706707|gb|FC055073.1|FC055073EST: ATATCTTCCAAAGTTCGCAGTTATTTTGGTTTCTTGCACCATGGGTCAAG GTTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAAGAACAGGCTCG
genomic: ATATCTTCCAAAGTTCGCAGTTATTTTGGTTTCTTGCACCATGGGTCAAGgtaatgctta ... ctgttaacagGTTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAAGAACAGGCTCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtgcaattgctgctttgtaattgggaaaattatatgactcattcctgttaacagGTTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAAGAACAGGCTCGACTTTATTACGCTGGGGCATCTGG
ctcattcct CT-rich tract
aaaattatatgact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatgcttatttttaagcatctaaaaaattttgtatgagcaatatggatccttattggaccaacaaaaactagaaaaattgtgcaattgctgctttgtaattgggaaaattatatgactcattcctgttaacagGTTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAAGAACAGGCTCGACTTTATTACGCTGGGGCATCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC