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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttgtttatggcctgtgccacatcagcccttgcaggtttacttatgatgttgcatttcgtactctttagttatatgctgagtttcataaatttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCACTGACAGAAAATTCAG

Basic information

species Vitis vinifera
transcript Vv01s0011g01960.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351024618|gb|FQ433033.1|FQ433033
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATNTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351049257|gb|FQ429000.1|FQ429000
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGT-TTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349824580|gb|FQ413247.1|FQ413247
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349823294|gb|FQ400273.1|FQ400273
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTGTTTTGACACTCAAGGAGGG                         G
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcag-
EST: gi|349823294|gb|FQ400273.1|FQ400273
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTGTTTTGACACTCAAGGAGGG                         G
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcag-
EST: gi|161721034|gb|FC069643.1|FC069643
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAAT
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAAT
EST: gi|351024239|gb|FQ423662.1|FQ423662
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351055959|gb|FQ453420.1|FQ453420
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGGTATTATAGGCA
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGG-TATTATAGGCA
EST: gi|349833395|gb|FQ420141.1|FQ420141
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATT
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATT
EST: gi|352786780|gb|FQ481155.1|FQ481155
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|110732497|gb|EE107834.1|EE107834
EST:     ATGGAGCTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGCCAAATCTCTANCAAAAACATTGAGATTGGGATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349828007|gb|FQ422875.1|FQ422875
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351033855|gb|FQ447893.1|FQ447893
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATNTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351031393|gb|FQ445418.1|FQ445418
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAA-CATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|110709321|gb|EE084677.1|EE084677
EST:     ATGGAGCTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         AATTGAAGGCCAAATCTCTANCAAAAACATTGAGAATTGGGATTATAGGCA
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGA-TTGGTATTATAGGCA
EST: gi|18459130|gb|BM437408.1|BM437408
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGGCAA-TCTCTAGCAAAAACATTGAGATTGGTATTATAGGCA
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGG-CAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCA
EST: gi|71874592|gb|DT023647.1|DT023647
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|161719842|gb|FC066700.1|FC066700
EST:     ATGGAGCTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGCCAAATCTCTAGCAAAAACATTGAGATTGGGATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351034587|gb|FQ457944.1|FQ457944
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351056934|gb|FQ443561.1|FQ443561
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|71874034|gb|DT023089.1|DT023089
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|71865594|gb|DT014649.1|DT014649
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGC
EST: gi|351026121|gb|FQ428133.1|FQ428133
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|110722035|gb|EE097915.1|EE097915
EST:     ATGGAGCTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGCCAAATCTCTAACAAAAACCTTGAGATTGGGATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|71875837|gb|DT024892.1|DT024892
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCNAATCTCTAGCAAAAACATTGA
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGA
EST: gi|351025845|gb|FQ427857.1|FQ427857
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATNTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCANAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|110723186|gb|EE100208.1|EE100208
EST:     ATGGAGCTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAAGAAGG                         ATTTGAAGGCCAAATCTCTAGCAAAAACATTGAGATTGGGATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351015715|gb|FQ431670.1|FQ431670
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|26263073|gb|CA814136.1|CA814136
EST:     ATGGAATTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCATATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351034033|gb|FQ447950.1|FQ447950
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349823750|gb|FQ415161.1|FQ415161
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATNTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCANAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349833047|gb|FQ416425.1|FQ416425
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349829045|gb|FQ419577.1|FQ419577
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|37187366|gb|CF606719.1|CF606719
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|110396311|gb|EC961994.1|EC961994
EST:     ATGGAGCTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGCCAAATCTCTAGCAAAAACATTGAGATTGGGATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349813035|gb|FQ411275.1|FQ411275
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATA
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATA
EST: gi|351023525|gb|FQ432908.1|FQ432908
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349810102|gb|FQ401548.1|FQ401548
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGGCACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351019336|gb|FQ429496.1|FQ429496
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATNTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349830442|gb|FQ416740.1|FQ416740
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|30326896|gb|CD010158.1|CD010158
EST:     ATGGAACTTGATGATGCTGTCCACACGGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351042546|gb|FQ431144.1|FQ431144
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|30254545|gb|CB971290.1|CB971290
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAAACATTGAGAT-GANTATTATAGGC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAA-CATTGAGATTGG-TATTATAGGC
EST: gi|351018781|gb|FQ425683.1|FQ425683
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349822557|gb|FQ412832.1|FQ412832
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351030830|gb|FQ438866.1|FQ438866
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351014327|gb|FQ437329.1|FQ437329
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349820335|gb|FQ403951.1|FQ403951
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349830137|gb|FQ420397.1|FQ420397
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATNTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349825798|gb|FQ423093.1|FQ423093
EST:     TGGAACTTGATGATGCTGTTCACACAGCTATTTTTGACACTCAAGGAGGG                         G
genomic: TGGAACTTGATGATGCTGTCCACACAGCTATTTT-GACACTCAAGGAGGGgtatatgcat ... atttgtgcag-
EST: gi|349825798|gb|FQ423093.1|FQ423093
EST:     TGGAACTTGATGATGCTGTTCACACAGCTATTTTTGACACTCAAGGAGGG                         G
genomic: TGGAACTTGATGATGCTGTCCACACAGCTATTTT-GACACTCAAGGAGGGgtatatgcat ... atttgtgcag-
EST: gi|351027537|gb|FQ446700.1|FQ446700
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|110694632|gb|EE071906.1|EE071906
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351019358|gb|FQ429520.1|FQ429520
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351042920|gb|FQ451214.1|FQ451214
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATNTTGACACTCAAGGAGGG                         ATTTGAAGGACAAATCTCTAGCAAAAACATTGAGATTGGTATTATGGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351019037|gb|FQ426536.1|FQ426536
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|110730033|gb|EE106653.1|EE106653
EST:     ATGGAGCTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGCCAAATCTCTAGCAAAAACATTGAGATTGGGAATATAAGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349825869|gb|FQ423164.1|FQ423164
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351022594|gb|FQ447116.1|FQ447116
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|110688210|gb|EE066498.1|EE066498
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349819242|gb|FQ412136.1|FQ412136
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAAGGCAAAT
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAAT
EST: gi|351029919|gb|FQ427759.1|FQ427759
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTCTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351031360|gb|FQ445385.1|FQ445385
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAAGG-A
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATA-GGCA
EST: gi|351029955|gb|FQ430697.1|FQ430697
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351016627|gb|FQ424054.1|FQ424054
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351013410|gb|FQ425441.1|FQ425441
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349818674|gb|FQ403508.1|FQ403508
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|27579248|gb|CB001943.1|CB001943
EST:     ATGGAACTTGATGATGCTGTCCACACGGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|30328065|gb|CD011327.1|CD011327
EST:     ATGGAACTTGATGATGCTGTCCACACGGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351040402|gb|FQ434535.1|FQ434535
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|349826813|gb|FQ418904.1|FQ418904
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351030254|gb|FQ432192.1|FQ432192
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351016774|gb|FQ424201.1|FQ424201
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGG-CNAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|110359904|gb|EC922217.1|EC922217
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC
EST: gi|351015657|gb|FQ427142.1|FQ427142
EST:     ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGG                         ATTTGAAGGGCAAATCTCTAGCANAAACATTGAGATTGGTATTACAGGCAC
genomic: ATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcat ... atttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgttgcatttcgtactctttagttatatgctgagtttcataaatttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCACTGACAGAAAATTCAG
                                   agtttcataaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcttgtttatggcctgtgccacatcagcccttgcaggtttacttatgatgttgcatttcgtactctttagttatatgctgagtttcataaatttgtgcagATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCACTGACAGAAAATTCAG

- - - -tatggcc
- - - - - - - - - ccacatc
- - - - - - - - - - - - - - ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - gcatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctg