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...atcttgtctaatcttgagggattcctcatatgacatttaaattcaattcttgattttcttttgaattgattccatgtcttgtttgacttggattttgcagAATCCTTGGGATGTCATCCAGTTCTCTGGAAATGCACAGATTCATTTGGACTCCTTCTTGTCAGTCTTCAATATATCTGGCCTTCCTGAAGAATATTATC
species | Vitis vinifera |
transcript | Vv01s0011g01080.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGCTGAAAAATGACATGTTAATGCAAAGATATGGTTTTTCATCCCCTGTG AATCCTTGGGATGTCATCCAGTTCTCTGGAAATGCACAGAEST: gi|32247267|gb|CD713086.1|CD713086
genomic: GGCTGAAAAATGACATGTTAATGCAAAGATATGGTTTTTCATCCCCTGTGgtaatttgct ... gattttgcagAATCCTTGGGATGTCATCCAGTTCTCTGGAAATGCACAGA
EST: GGCTGAAAAATGACATGTTAATGCAAAGATATGGTTTTTCATCCCCTGTG AATCCTTGGGATGTCATCCAGTTCTCTGGAAATGCACAGATTCATTTGGAC
genomic: GGCTGAAAAATGACATGTTAATGCAAAGATATGGTTTTTCATCCCCTGTGgtaatttgct ... gattttgcagAATCCTTGGGATGTCATCCAGTTCTCTGGAAATGCACAGATTCATTTGGAC
attcttgattttcttttgaattgattccatgtcttgtttgacttggattttgcagAATCCTTGGGATGTCATCCAGTTCTCTGGAAATGCACAGATTCATTTGGACTCCTTCTTGTCAGTCTTCAATATATCTGGCCTTCCTGAAGAATATTATC
gtttgac putative branch site (score: 4)
attttcttttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcttgtctaatcttgagggattcctcatatgacatttaaattcaattcttgattttcttttgaattgattccatgtcttgtttgacttggattttgcagAATCCTTGGGATGTCATCCAGTTCTCTGGAAATGCACAGATTCATTTGGACTCCTTCTTGTCAGTCTTCAATATATCTGGCCTTCCTGAAGAATATTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - tcctcat
- - - - - - - - - - - - - - - - - - - aaattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacttg