1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aattgattcaaccttctgtgactaatttttatgctatgtgtccatttatagattcagttggaacaatgacttatgtgacccttaaacttgtataatgcagAGGTTACATTGTGAATTGCCGAATGCAATTATAAGCCAAATACCAGATTGTGGGCACCTCCCTCATGTGGAAAAGCCTCACTCTGTTTCCAAGTTGATTA
species | Vitis vinifera |
transcript | Vv01s0011g00550.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTATCATATGGGGTGAGGATGACCAGATAATCAGCAACAAGCTTGCTGTG AGGTTACATTGTGAATTGCCGAATGCAATTATAAAGCCAAATACCAGATTGEST: gi|110361486|gb|EC924960.1|EC924960
genomic: TTATCATATGGGGTGAGGATGACCAGATAATCAGCAACAAGCTTGCTGTGgttagtacat ... tataatgcagAGGTTACATTGTGAATTGCCGAATGCAATTATAA-GCCAAATACCAGATTG
EST: TTATCATATGGGGTGAGGATGACCAGATAATCAGCAACAAGCTTGCTGTG AGGTTACATTGTGAATTGCCGAATGCAATTATACGCCAAATACCAGATTGTEST: gi|110361507|gb|EC924986.1|EC924986
genomic: TTATCATATGGGGTGAGGATGACCAGATAATCAGCAACAAGCTTGCTGTGgttagtacat ... tataatgcagAGGTTACATTGTGAATTGCCGAATGCAATTATAAGCCAAATACCAGATTGT
EST: TTATCATATGGGGTGAGGATGACCAGATAATCAGCAACAAGATTGCTGTG AGGTTACATTGTGAATTGCCGAATGCAATTATACGCCAAATACCAGATTGT
genomic: TTATCATATGGGGTGAGGATGACCAGATAATCAGCAACAAGCTTGCTGTGgttagtacat ... tataatgcagAGGTTACATTGTGAATTGCCGAATGCAATTATAAGCCAAATACCAGATTGT
ttatagattcagttggaacaatgacttatgtgacccttaaacttgtataatgcagAGGTTACATTGTGAATTGCCGAATGCAATTATAAGCCAAATACCAGATTGTGGGCACCTCCCTCATGTGGAAAAGCCTCACTCTGTTTCCAAGTTGATTA
ttaaacttgtataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgattcaaccttctgtgactaatttttatgctatgtgtccatttatagattcagttggaacaatgacttatgtgacccttaaacttgtataatgcagAGGTTACATTGTGAATTGCCGAATGCAATTATAAGCCAAATACCAGATTGTGGGCACCTCCCTCATGTGGAAAAGCCTCACTCTGTTTCCAAGTTGATTA
- - - ttcaacc
- - - - - - - - - - - - - - - - -ctatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttaa