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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgagtataagcattctgggctggatggaaactatacaaacttatgattaagtaactagtttcaaccatcaacttgttttatactttgacagGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATGCTTCTTGCTCGCATTACAATGGGACACTCTGTTGCTATTTGGTTCTCTT

Basic information

species Vitis vinifera
transcript Vv01s0011g00500.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA02G13010.1 (Glycine max), 3'ss of exon 5
------------------------------------gtgtgagtataagcattctgggctggatggaaactatacaaacttatgattaagtaactagtttcaaccatcaacttgttttatactttgacagGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATGCTTCTTGCTCGCATTACAATGGGACACTCTGTTGCTATTTGGTTCTCTT
                                     | ||||  | |   |  |      | ||   | | |    |  | |   ||  |    | ||   | |||  |  | | | |||  |  | |||||||||||||||| || || || |||||| ||||||||||  | ||||||||| |||||||| |||| || |||||| |  | || |||||||| ||||
gttcaagttacatttattctaactgtttagatcattatctgagagttaaagtctttaatgagttgtgcattttttttatatgtatgtatattttgacttattaacatatatatatat-atatatatatagGAAGGAAGTCAAGAAACTGTGGCCACAATGATTGGCATGGCACTGGGAATGCTTGTTGCTCGCCTTACCATTGGACACCCACTAGCCATTTGGTTTTCTT

upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA01G07190.2 (Glycine max), 3'ss of exon 9
-gtgtgagtataagcattctgg--gctggatggaaactatacaaacttatgattaagt--aactagtttcaaccatc-aacttgttt-tatactttgacagGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATGCTTCTTGCTCGCATTACAATGGGACACTCTGTTGCTATTTGGTTCTCTT
  | |   || |   ||||     | | |||    | | |   |  | |||  ||  |  |  | |    |   ||   |||| ||  | ||  |  | |||||||||||||||| || || || |||||| ||||||||||  | ||||||||| |||||||| |||| || || ||| |  | || |||||||| ||||
gttctagttacagttattccaactgttagatcattatt-tgagagttaatgtctatattcagttgggcatatatatttgacttattaatgtatatctatagGAAGGAAGTCAAGAAACTGTGGCCACAATGATTGGCATGGCACTGGGAATGCTTGTTGCTCGCCTTACCATTGGGCACCCACTAGCCATTTGGTTTTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161708215|gb|FC057847.1|FC057847
EST:     TGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAG                         GAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATG
genomic: TGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAGgtgtgagtat ... actttgacagGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATG
EST: gi|71879732|gb|DT028787.1|DT028787
EST:     TGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAG                         GAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATG
genomic: TGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAGgtgtgagtat ... actttgacagGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATG
EST: gi|71877796|gb|DT026851.1|DT026851
EST:     TGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAG                         GAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATG
genomic: TGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAGgtgtgagtat ... actttgacagGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATG
EST: gi|71878342|gb|DT027397.1|DT027397
EST:     TGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAG                         GAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATG
genomic: TGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAGgtgtgagtat ... actttgacagGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATG
EST: gi|71878071|gb|DT027126.1|DT027126
EST:     TGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAG                         GAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATG
genomic: TGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAGgtgtgagtat ... actttgacagGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATG
EST: gi|71879077|gb|DT028132.1|DT028132
EST:     TGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAG                         GAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATG
genomic: TGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAGgtgtgagtat ... actttgacagGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATG
EST: gi|71880088|gb|DT029143.1|DT029143
EST:     TGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAG                         GAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATG
genomic: TGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAGgtgtgagtat ... actttgacagGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacttatgattaagtaactagtttcaaccatcaacttgttttatactttgacagGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATGCTTCTTGCTCGCATTACAATGGGACACTCTGTTGCTATTTGGTTCTCTT
            aagtaac  putative branch site (score: 2)
                                    ttgttttatacttt  TA-rich tract