1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttattatcataaagttgttagactgcctgaaatagttgagaaatatgtgataagtggatcacatagttaataatcgatattatccttattgtgaattcagGAAGGTATGGCCAACCAGAAGAAGTTGCTGGACTGGTTGAGTTTTTGGCCCTCGATCCTGCAGCCAGTTACATTACAGGACAG
species | Vitis vinifera |
transcript | Vv01s0010g02670.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAAGCTTGGGGAAGACATTGAGAAGAAAATCTTGGAAACCATCCCCTTAG GAAGGTATGGCCAACCAGAAGAAGTTGCTGGACTGGTGGAGTTTTTGGCCCEST: gi|33408741|gb|CF214368.1|CF214368
genomic: TAAGCTTGGGGAAGACATTGAGAAGAAAATCTTGGAAACCATCCCCTTGGgtgagagata ... gtgaattcagGAAGGTATGGCCAACCAGAAGAAGTTGCTGGACTGGTTGAGTTTTTGGCCC
EST: TAAGCTTGGGGAAGACATTGAGAAGAAAATCTTGGAAACCATCCCCTTAG GAAGGTATGGCCAACCAGAAGAAGTTGCTGGACTGGTGGAGTTTTTGGCCCEST: gi|30256288|gb|CB972131.1|CB972131
genomic: TAAGCTTGGGGAAGACATTGAGAAGAAAATCTTGGAAACCATCCCCTTGGgtgagagata ... gtgaattcagGAAGGTATGGCCAACCAGAAGAAGTTGCTGGACTGGTTGAGTTTTTGGCCC
EST: TAAGCTTGGGGAAGACATTGAGAAGAAAATCTTGGAAACCATCCCCTTAG GAAGGTATGGCCAACCAGAAGAAGTTGCTGGACTGGTGGAGANTTTGGGAC
genomic: TAAGCTTGGGGAAGACATTGAGAAGAAAATCTTGGAAACCATCCCCTTGGgtgagagata ... gtgaattcagGAAGGTATGGCCAACCAGAAGAAGTTGCTGGACTGGTTGAGTTTTTGGCCC
tgtgataagtggatcacatagttaataatcgatattatccttattgtgaattcagGAAGGTATGGCCAACCAGAAGAAGTTGCTGGACTGGTTGAGTTTTTGGCCCTCGATCCTGCAGCCAGTTACATTACAGGACAG
agttaat putative branch site (score: 4)
atagttaataatcgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattatcataaagttgttagactgcctgaaatagttgagaaatatgtgataagtggatcacatagttaataatcgatattatccttattgtgaattcagGAAGGTATGGCCAACCAGAAGAAGTTGCTGGACTGGTTGAGTTTTTGGCCCTCGATCCTGCAGCCAGTTACATTACAGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - -cataaag
- - - - - - - - - - -actgcct
- - - - - - - - - - - - - - gaaatag
- - - - - - - - - - - - - - - - - - - agaaata