Sequence
atgc intronic sequence ATGC exonic sequencegtgatttattcatttgtcaagaaattaagttactaatttctttggctttttatgttgccttcttggtataatgctgtagcaaggtttttactcattgatccgtgttatgtttagGGAGCCATTACTCAGCTGTCAGAACAAATTTCATCACTAAATGATAGGATGGATGAATTTACAAGTCAGATTGAAGAGCTGAATTCCAAGTTAACCATGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g01080.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA02G14110.1 (Glycine max), 3'ss of exon 10
---------gtgatttatt-catttgtcaagaa--attaagttactaatttctttggct---ttttatgttgccttcttggtataatgctgtagcaaggtttttactcattgatccgtgttatgtttagGGAGCCATTACTCAGCTGTCAGAACAAATTTCATCACTAAATGATAGGATGGATGAATTTACAAGTCAGATTGAAGAGCTGAATTCCAAGTTAACCATGA
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gtaaattgggttacttgtagtggttgttaattcctgtaaagataccgaattcttataatcacttttatattggtccattccccaataaccatc-tactttttgtcttcatttaccta-atattttgtagGGAGCGATCAATCAGCTTTCGGACCAAATTTCTGCCCTCAATGATAGAATGGATGAGTTTACAAATCGCATTGAAGAGCTGAATTCCAAGTTAACCATAA
upper sequence: Vv01s0010g01080.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA01G09660.1 (Glycine max), 3'ss of exon 10
gtgattt-attcatttgtcaagaaattaagttact--aatttctttggctttttatgttgccttct----tggtataatgct--gtagcaaggt-ttttactcattgatccgtgttatgtt-tagGGAGCCATTACTCAGCTGTCAGAACAAATTTCATCACTAAATGATAGGATGGATGAATTTACAAGTCAGATTGAAGAGCTGAATTCCAAGTTAACCATGA
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gtactttgagttacgtgcagtagtttttaattcctgtaaagatactgaattcatattatcacttctatattggtccattccccaataactatctactttttgtcttcatttacctaatatggtagGGAACCATCAATCAGCTTTCAGACCAAATTTCTGCCCTCAATGATAGAATGGACGAGTTTACAAATCGCATTGAAGAGCTGAATTCCAAGTTAACCATCA
upper sequence: Vv01s0010g01080.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G26190.1 (Arabidopsis thaliana), 3'ss of exon 10
gtgatttattcatttgtcaagaaattaagttactaatttctt--tggc--tttttatgttgccttcttggtataatgctgtagcaaggtttttactcattgatccgtgttatgtttagGGAGCCATTACTCAGCTGTCAGAACAAATTTCATCACTAAATGATAGGATGGATGAATTTACAAGTCAGATTGAAGAGCTGAATTCCAAGTTAACCATGA
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---------------gttcaaatttgttctctttcattccctcttggcaactttgaagtcttccttttaacttaagggtgca------cttcttctggtt--ttca-actatttttagGGGTTTATGACTCTGCTTTCAGAACAAATATCATCTCTCAACGAGAGAATGGATGAGTTCACAAGTCGAATTGAAGAGCTCAATTCAAAGTTGAGCTGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71869242|gb|DT018297.1|DT018297EST: GAAAGTTTGATGACAGACACACAGAATTACCAGCAATGCTAGCAAACAAG GGAGCCATTACTCAGCTGTCAGAACAAATTTCATCACTAAATGATAGGATG
genomic: GAAAGTTTGATGACAGACCCACAGAATTACCAGCAATGCTAGCAAACAAGgtgatttatt ... ttatgtttagGGAGCCATTACTCAGCTGTCAGAACAAATTTCATCACTAAATGATAGGATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcttggtataatgctgtagcaaggtttttactcattgatccgtgttatgtttagGGAGCCATTACTCAGCTGTCAGAACAAATTTCATCACTAAATGATAGGATGGATGAATTTACAAGTCAGATTGAAGAGCTGAATTCCAAGTTAACCATGA
cattgat putative branch site (score: 4)
ttatgttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgatttattcatttgtcaagaaattaagttactaatttctttggctttttatgttgccttcttggtataatgctgtagcaaggtttttactcattgatccgtgttatgtttagGGAGCCATTACTCAGCTGTCAGAACAAATTTCATCACTAAATGATAGGATGGATGAATTTACAAGTCAGATTGAAGAGCTGAATTCCAAGTTAACCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA