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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatcatatgtgggatatgcttaatctattgattagcggtctctgccattcctctgtcctcaatttatctttcttttggttgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAGCAGGCCAAAACTCTCAAGGTTACTTGCAACCTCAATAATGCAGCATGCA

Basic information

species Vitis vinifera
transcript Vv00s0769g00010.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0769g00010.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA18G32830.1 (Glycine max), 3'ss of exon 9
gtaaaatcatatgtgggatatgcttaatctattgattagcggtctctgccattcctctgtcctcaatttatctttcttttggttgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAGCAGGCCAAAACTCTCAAGGTTACTTGCAACCTCAATAATGCAGCATGCA-
 |||  | | ||  |  |||   ||  || | |   ||   ||   |||    | ||||     |||  |   ||           | || |||| |  |||||||| || ||||||||||| |||||||| || ||||| ||||||||||| ||  | |||||| | ||||| || || ||||| || |||| 
-taatctaaaataggtcatacatttgttc-actttctacttgttgatgca--ccttctgatggtaatgaaaactt-----------actgtaggCCGTGAAGTACATAGAATATGATTCCTCCTTTGGTGAGGAGGAGAAAAAGCAGGCCAAGACCTTGAAGGTTGCCTGCAATCTGAACAATGCTGCTTGCAA

upper sequence: Vv00s0769g00010.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G46090.2 (Glycine max), 3'ss of exon 9
gtaaaatcatatgtgggatatgcttaatctattgattagcggtctctgccattcctctgtcctcaatttatctttcttttggttgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAGCAGGCCAAAACTCTCAAGGTTACTTGCAACCTCAATAATGCAGCATGCA
                  ||  || ||     | ||          | | |    |   | | |    |     |  |    |   | || |||||| ||||||||| || ||||||||||| || ||||| || ||||| ||||||||||| ||  | |||||| | ||||| || || ||||| || ||||
-----------------gtaatctaaaatagattatacatttcactttctacatgttgatgcacctgctgatggtactgaaatcttactgtagGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAGCAGGCCAAGACCTTGAAGGTTGCCTGCAATCTTAACAATGCTGCTTGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351052096|gb|FQ455389.1|FQ455389
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|351030826|gb|FQ438862.1|FQ438862
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|30125943|gb|CB911282.1|CB911282
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|33403350|gb|CF208977.1|CF208977
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|30253340|gb|CB970891.1|CB970891
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|77587533|gb|DV222932.1|DV222932
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|110690586|gb|EE067825.1|EE067825
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|30129057|gb|CB914396.1|CB914396
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|352790570|gb|FQ478209.1|FQ478209
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|110423083|gb|EC989419.1|EC989419
EST:     ATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: ATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|351042032|gb|FQ456242.1|FQ456242
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|29783511|gb|CB349715.2|CB349715
EST:     TGCTATTCAAGGCTGGTAAATATGCAGGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|110398522|gb|EC964942.1|EC964942
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|83275789|gb|DV939797.1|DV939797
EST:     GAGATATGAGAAG                         GCTGCAAAGTACA-TGNAGTATGATTCCTCTTTNGGTGAAGAAGAGAAGAA
genomic: GAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTG-AGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAA
EST: gi|33403274|gb|CF208901.1|CF208901
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|349830992|gb|FQ418276.1|FQ418276
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAGG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|349830215|gb|FQ420475.1|FQ420475
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|349829935|gb|FQ422248.1|FQ422248
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|110400903|gb|EC967488.1|EC967488
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|110689806|gb|EE066352.1|EE066352
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
EST: gi|110377095|gb|EC942156.1|EC942156
EST:     TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAG                         GCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG
genomic: TGCTATTCAAGGCTGGTAAATATGCAAGAGCCTCAAAGAGATATGAGAAGgtaaaatcat ... tgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcggtctctgccattcctctgtcctcaatttatctttcttttggttgcaatgcagGCTGCAAAGTACATTGAGTATGATTCCTCTTTTGGTGAAGAAGAGAAGAAGCAGGCCAAAACTCTCAAGGTTACTTGCAACCTCAATAATGCAGCATGCA
                                tctttcttttggtt  CT-rich tract
                          aatttatctttctttt  TA-rich tract