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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggactgagtattttagtttgtttatgatgagatgcctaaatttgttaatgatgagatgtctctcccttttcctatgtaacacatgttctaaaaaatgtgatattatgtatgctctgttctcgtagatttctgactctagctccagaagttctatttgagagtatggaaatattttttattttttcttttgcagACACATAGTGACTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAGTATTCAACTGGGAAAACTACATTCATAAAACATTTACTCGGATGTAATTTCC

Basic information

species Vitis vinifera
transcript Vv00s0516g00020.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 3'ss of exon 8
gtaagtggactgagtattttagtttgtttatgatgagatgcctaaatttgttaatgatgagatgtctctcccttttcctatgtaacacatgttctaaaaaatgtgatattatgtatgctctgttctcgtagatttctgactctagctccagaagttctatttgagagtatggaaatattttttattttttc-ttttgcagACACATAGTGACTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAGTATTCAACTGGGAAAACTACATTCATAAAACATTTACTCGGATGTAATTTCC
                                                                                         ||    ||||| | ||  | ||   | |  || |  ||       ||| | |     | ||  | |||    ||    | |     ||  |  | ||||| | ||||| ||||    ||||| || ||||| || || ||||| ||| |  ||||||||||||| || || ||||| ||||||||||| ||||||||       ||||  |
-----------------------------------------------------------------------------------------tgaag-aaaaagtttggaactaaacaaggcctctattc------ctctcagttggcatgcatgacttcctaatggagctttc----tacgtcatgtttttccattttgtagACTAGCAGTGATTTCGATGCGAAGCCAATGGTCATGTTGCTGGGTCAGTATTCCACAGGAAAAACCACATTCATAAAGCATTTACTGAAGACAAATTATC

upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G065012_T03 (Zea mays), 3'ss of exon 8
gtaagtggactgagtattttagtttgtttatgatgagatgcctaaatttgttaatgatgagatgtctctcccttttcctatgtaacacatgttctaaaaaatgtgatattatgtatgctctgttctcgtagatttctgactctagctccagaagttctatttgagagtatggaaatattttttattttttctttt--gcagACACATAGTGACTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAGTATTCAACTGGGAAAACTACATTCATAAAACATTTACTCGGATGTAATTTCC
                                                              |   | || ||   ||| |||   |  ||   |  ||  |||  ||  |   | |      | | ||| | |  ||  ||  |||||          ||||      ||| ||| | |       |  | ||    |||||    || || || ||||| || || ||||| ||||| |||||||| || || || |||||||| ||||||||||| ||||||||   |   | ||  |
-------------------------------------------------------------gtaattttcact---cctttgttttatctgcagtttaatttgttctacaacaaaggtaaatctgttgtaaagtgttgtgtc--gctcc----------tttgc-----tggtaatttctgcccccctccccttcaaacagACTAGCAGCGATTTCGATGCGAAGCCAATGGTCATGCTGTTGGGTCAATACTCCACGGGGAAAACAACATTCATAAAGCATTTACTAAAAACAAGTTATC

upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G11970.1 (Glycine max), 3'ss of exon 7
gtaagtggactgagtattttagtttgtttatgatgagatgc-ctaaatttgttaatgatgagatgtctctcccttttcctatgtaacacatgttctaaaaaatgtgatattatgtatgctctgttctcgtagatttctgactctagctccagaagttctatttgagagtatggaaatattttttattttttcttttgcagACACATAGTGACTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAGTATTCAACTGGGAAAACTACATTCATAAAACATTTACTCGGATGTAATTTCC
                         ||   |   |   ||| |  ||| | | ||| |  ||||    ||   ||||  ||  |      ||||    | |   || ||        |||||  | | | || | |   | ||            |  ||||    | |     ||||||||   |||  ||  || |||||  | | ||| |||||||| ||||| ||||| |||||| | ||||| |||||||| || ||||||||||| |||||||||||  |   |||| |||  |
-------------------------gtaagttgcgttttgcacccaatgtataaataa-aagata---ctaaattttgttaactg-----tgtttgtgagagcatggtaccg-----gctctact-tagcaggtctt--attcgcataaatatgatgatatt---aacttcaagaatattttg-gtttcatccctttcagACCAACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATC

upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G01160.1 (Glycine max), 3'ss of exon 6
gtaagtggactgagtattttagtttgtttatgatgagatgcctaaatttgttaatgatgagatgtctctcccttttcctatgtaacacatgttctaaaaaatgtgatattatgtatgctctgttctcgtagatttctgactctagctccagaagttctatt-tgagagtatggaaatattttttattttttcttttgcagACACATAGTGACTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAGTATTCAACTGGGAAAACTACATTCATAAAACATTTACTCGGATGTAATTTCC
                                                             | ||  |        || |||||  | || || | ||   |||        | ||| |   |  || ||  |  |  |   ||    || || |   ||  |   |   |  | ||||| ||  ||| |||  || |||||  | | ||| |||||||| ||||| ||||| |||||| | ||||| |||||||| || ||||||||||| |||||||||||  |   |||| |||  |
-----------------------------------------------------------gtaagtagcatttgcacccaatgta-taaattttgttaactgtgtttctgagagcatggtacttgttc-tacttagcatatcttattcgcataaatatgatgatattaacttcaagatattcttggtttcttccctttcagACCAACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATC

upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA07G39450.1 (Glycine max), 3'ss of exon 8
gtaagtggactgagtattttagtttgtttatgatgagatgcctaaatttgttaatgatgagatgtctctcccttttcctatgtaacacatgttctaaaaaatgtgatattatgtatgctctgttctcgtagatttctgactctagctccagaagttctatttga--gagtatggaaatattttttattttttcttttgcagACACATAGTGACTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAGTATTCAACTGGGAAAACTACATTCATAAAACATTTACTCGGATGTAATTTCC
                                                      |  ||| || |  | |||  |   ||  ||| | |||    ||    ||||| | ||   ||| |    ||   || | |    | | ||       || |   |||  |   ||| |   |||  ||||  ||| |  ||   |||||  | ||||| |||||||| ||||| ||||| |||||  | ||||| ||||| || |||||||| || |||||||||||||||||  ||||| |||  |
----------------------------------------------------gttagtgacatata-cacccaatatataaataaaatatgg---aatttttgtga-actacacatgttaatatcaattaaaatgac-attttattcatgcaaatgtgattatattaagtttaagaatggttttggtttgtcttt---cagACCAACAGTGATTTTGATGCTAAACCAATGGTCATGCTCCTTGGTCAATATTCCACAGGGAAAACAACCTTCATAAAACATTTACTAAGATGTGATTATC

upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA17G01310.1 (Glycine max), 3'ss of exon 8
gtaagtggactgagtattttagtttgtttatgatgagatgcctaaatttgttaatgatgagatgtctctcccttttcctatgtaacacatgttctaaaaaatgtgatattatgtatgctctgttctcgtagatttctgactctagctccagaagttctatttgagagtatggaaatattttttattttttcttttgcagACACATAGTGACTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAGTATTCAACTGGGAAAACTACATTCATAAAACATTTACTCGGATGTAATTTCC
                                                                              |  || ||| ||   |  || | |    ||  ||| |     | |||    | || |  || | |   | || | ||  |  |    ||| |   ||| | | |  | | |  ||   |||||  | ||||| |||||||| ||||| ||||| |||||  | ||||| ||||| ||||||||||| || || ||||||||||||||  ||||| |||  |
-----------------------------------------------------------------------------gttagtgacatatacacccaatatta-attaacatg-acatattattcatacaaatgt--gattattcatacaaatgtgattatattaagtttaagaatgtctgtggtgtgtcttt---cagACCAACAGTGATTTTGATGCTAAACCAATGGTCATGCTCCTTGGTCAATATTCCACTGGGAAAACAACCTTTATAAAACATTTACTAAGATGTGATTATC

upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT4G05520.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtggactgagtattttagtttgtttatgatgagatgcctaaatttgttaatgatgagatgtctctcccttttcctatgtaacacatgttctaaaaaatgtgatattatgtatgctctgttctcgtagatttctgactctagctccagaagttctatttgagagtatggaaatattttt--tattttttcttttgcagACACATAGTGACTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAGTATTCAACTGGGAAAACTACATTCATAAAACATTTACTCGGATGTAATTTCC
                                                         ||||   | ||     | |   | | ||||| |||       | | |    |||| |  | | | |    | |||  |      ||     |   |   | ||   | |  ||    |  || ||  || ||| |  |||||||||   ||| || |||||||||||||| ||||| |||||||||||||| ||||| || || ||||| ||||| |||||||| || ||||||||| | | ||
--------------------------------------------------------gtgagtaatatccttactgtttca-gaaacacttgt------gagtttttgtttat-tccgttttttcggtgaagagctaaagaactcatatctatatcaccatggaaaatgattctcagtttattgatactttatgatttgcagACTAGTAGCGATTTTGATGCCAAACCAATGGTAATGCTTTTGGGTCAATATTCCACCGGAAAAACAACATTTATAAAACACTTGCTCGGATGTGACTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctccagaagttctatttgagagtatggaaatattttttattttttcttttgcagACACATAGTGACTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAGTATTCAACTGGGAAAACTACATTCATAAAACATTTACTCGGATGTAATTTCC
                               tattttttattttttc  CT-rich tract
                     agtatggaaatatttt  TA-rich tract