Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagttcttttgattcatgatttagcttcaacagtttgattgctatctataaaacaattggtttattggcaagctacttgtgcagGTTTTGTCAGATGATGAGAAAAGATCCTTATACGACAGGTATGGGGAAGCAGGACTTAAAGGTGCTGGTATGGGCATGGGG

Basic information

species Vitis vinifera
transcript Vv00s0324g00040.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0324g00040.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA18G01960.1 (Glycine max), 3'ss of exon 6
gtaaaagttcttttgattcatgatttagcttcaacagtttgattgctatctataaaacaattggtttattggcaagctacttgtgcagGTTTTGTCAGATGATGAGAAAAGATCCTTATACGACAGGTATGGGGAAGCAGGACTTAAAGGTGCTGGTATGGGCATGGGG
|||||   |||   | ||  |||       |   || | ||  ||    ||   ||   ||   | | |     |  | ||| ||||||| |||||||||||||||||| ||||| |||| ||||  ||||| || || |||||||| ||| | || ||||||||||||
gtaaa---tctacagcttgttgaacacagctggccattatgcatgtctactcgtaattgatct-tctgtaattcaaattcttttgcagGTCTTGTCAGATGATGAGAAACGATCCATATATGACACATATGGAGAGGCTGGACTTAAGGGTTCAGGAATGGGCATGGGG

upper sequence: Vv00s0324g00040.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA11G38040.1 (Glycine max), 3'ss of exon 6
gtaaaagttcttttgattcatgatttagcttcaacagtttg-attgctatctataaaacaattggtttattggcaagctacttgtgcagGTTTTGTCAGATGATGAGAAAAGATCCTTATACGACAGGTATGGGGAAGCAGGACTTAAAGGTGCTGGTATGGGCATGGGG
     | | ||   | ||  |||       |   || | || ||  |||   ||||   |  |  | | |     |  | ||| ||||||| |||||||||||||||||| ||||| |||| || |  ||||| || || |||||||| ||| | || ||||||||||||
---gtaatactacagcttgttgaacgcagctggccattatgcatgtctactcataattgatct--tctgtaattcaaattcttttgcagGTCTTGTCAGATGATGAGAAACGATCCATATATGATACATATGGAGAGGCTGGACTTAAGGGTTCAGGAATGGGCATGGGG

upper sequence: Vv00s0324g00040.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA05G31080.1 (Glycine max), 3'ss of exon 6
gtaaaagttcttttgattcatgatttagcttcaacagtttgattgctatctataaaacaattggtttattggcaa--gctacttgtgcagGTTTTGTCAGATGATGAGAAAAGATCCTTATACGACAGGTATGGGGAAGCAGGACTTAAAGGTGCTGGTATGGGCATGGGG
||||||   ||   ||||  | |  |   ||   |  | ||  |  | | || | || || | || |  ||  ||    | |   ||||||| || ||||||||||||||| ||||| |||| ||||| | ||| || || || ||||||||| |||| ||||| ||||||
gtaaaa---ctgcagattattaaactcagtttgcccttatgcata-tgttta-acaataacttgtcttctgcgaataaattccattgcagGTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGG

upper sequence: Vv00s0324g00040.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G14290.1 (Glycine max), 3'ss of exon 6
gtaaaagttcttttgattcatgatttagcttcaacagtttgattgctatctataa-aacaattggtttattggcaa--gctacttgtgcagGTTTTGTCAGATGATGAGAAAAGATCCTTATACGACAGGTATGGGGAAGCAGGACTTAAAGGTGCTGGTATGGGCATGGGG
|||||| | |   | ||| |  | | |||||        | ||   ||| | ||| || ||||  | |  ||  ||    | |     ||||| || ||||||||||||||| ||||| |||| ||||||| ||| || || || ||||||||| |||  ||||| ||||||
gtaaaactacagattattaa--actcagctt----gcccttatgcatatgtttaacaataattcctcttctgtgaataaattccaccacagGTGTTATCAGATGATGAGAAACGATCCATATATGACAGGTTTGGAGAGGCTGGGCTTAAAGGTTCTGCAATGGGGATGGGG

upper sequence: Vv00s0324g00040.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT4G39960.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaaaagttcttttgattcatgatttagcttcaacagtttgattgctatctataaaacaattggtttattggcaagctacttgtgcagGTTTTGTCAGATGATGAGAAAAGATCCTTATACGACAGGTATGGGGAAGCAGGACTTAAAGGTGCTGGTATGGG---CATGGGG
||||| || |||| |||   || |||   || | || | ||  || ||  |  | | |       || ||   |   |  |  ||||| | || ||||||||||||||||||||  |||||||||| ||||| || |||||| ||||||| ||||| |||||   |||||||
gtaaa-gtcctttagat--gtgtttt---tttatcattctg-ctgatacttgaagagcctaaacattgtttttattattttcttgcagATCTTATCAGATGATGAGAAAAGATCTCTATACGACAGATATGGCGAGGCAGGAGTTAAAGGCGCTGGAATGGGAGGCATGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagtttgattgctatctataaaacaattggtttattggcaagctacttgtgcagGTTTTGTCAGATGATGAGAAAAGATCCTTATACGACAGGTATGGGGAAGCAGGACTTAAAGGTGCTGGTATGGGCATGGGG
   gtttgat  putative branch site (score: 5)
             tatctataaaacaatt  TA-rich tract