1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcccaactcccctttaacctggactgcccagatagATCTCTCTACGTTTCTAAACTTTTTACTTGTGAGTTGTGAAAAGGTCATTTTCAGAGATGTAGAAATGACATCTTAGCACCTATTGGGTACGTAACGAGA
species | Vitis vinifera |
transcript | Vv00s0323g00100.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTAATGTTATCAACTTATAAAGCTCAATTTGGACCGATCCTCAGGCCCAA GTCTCTCTACGTTTCTEST: gi|30135874|gb|CB921212.1|CB921212
genomic: TTAATGTTATCAACTTATAAAGCTCAATTTGGACCGATCCTCAGGCCCAAgtcccaactc ... gcccagatagATCTCTCTACGTTTCT
EST: TTAATGTTATCAACTTATAAAGCTCAATTTGGACCGATCCTCAGGCCCAA GTCTCTCTACGTTTCTAAACTTATTACTTGTGAGTTGTGAAAAGGTCATTTEST: gi|110421397|gb|EC987693.1|EC987693
genomic: TTAATGTTATCAACTTATAAAGCTCAATTTGGACCGATCCTCAGGCCCAAgtcccaactc ... gcccagatagATCTCTCTACGTTTCTAAACTTTTTACTTGTGAGTTGTGAAAAGGTCATTT
EST: TTAATGTTATCAACTTATAAAGCTCAATTTGGACCGATCCTCAGGCCCAA GTCTCTCTACGTTTCTAAACTTATTACTTGTGAGTTGTGAAAAGGTCATTTEST: gi|110365281|gb|EC928011.1|EC928011
genomic: TTAATGTTATCAACTTATAAAGCTCAATTTGGACCGATCCTCAGGCCCAAgtcccaactc ... gcccagatagATCTCTCTACGTTTCTAAACTTTTTACTTGTGAGTTGTGAAAAGGTCATTT
EST: TTAATGTTATCAACTTATAAAGCTCAATTTGGACCGATCCTCAGGCCCAA GTCTCTCTACGTTTCTAAACTTATTACTTGTGAGTTGTGAAAAGGTCAEST: gi|110415242|gb|EC981126.1|EC981126
genomic: TTAATGTTATCAACTTATAAAGCTCAATTTGGACCGATCCTCAGGCCCAAgtcccaactc ... gcccagatagATCTCTCTACGTTTCTAAACTTTTTACTTGTGAGTTGTGAAAAGGTCA
EST: TTAATGTTATCAACTTATAAAGCTCAATTTGGACCGATCCTCAGGCCCAA GTCTCTCTACGTTTCTAAACTTATTACTTGTGAGTTGTGAAAAGGTCATTT
genomic: TTAATGTTATCAACTTATAAAGCTCAATTTGGACCGATCCTCAGGCCCAAgtcccaactc ... gcccagatagATCTCTCTACGTTTCTAAACTTTTTACTTGTGAGTTGTGAAAAGGTCATTT
gtcccaactcccctttaacctggactgcccagatagATCTCTCTACGTTTCTAAACTTTTTACTTGTGAGTTGTGAAAAGGTCATTTTCAGAGATGTAGAAATGACATCTTAGCACCTATTGGGTACGTAACGAGA
ctttaac putative branch site (score: 3)
tttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcccaactcccctttaacctggactgcccagatagATCTCTCTACGTTTCTAAACTTTTTACTTGTGAGTTGTGAAAAGGTCATTTTCAGAGATGTAGAAATGACATCTTAGCACCTATTGGGTACGTAACGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG