Sequence
atgc intronic sequence ATGC exonic sequence...tatgtttcttataagcattcaatatgctagttgaatttattgcttggagcatatctttttctgcagcctacttatgttttcatgttctgttgtgctatagATGATTACTTCCTGTCTCGGCTACCAATTGTGGAGAAGAGGCTAGCCCAAGGTGGGATCCGCCTGGCTGCCACCCTTAACCGTATCTTTGCTTCTCAACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0301g00110.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT4G21585.1 (Arabidopsis thaliana), 3'ss of exon 8
------------------------------------------------------------------------------tatgtttcttataagcattcaatatgctagttgaatttattgcttggagcatatctttttctgcagcctacttatgttttcatgttctgttgtgctatagATGATTACTTCCTGTCTCGGCTACCAATTGTGGAGAAGAGGCTAGCCCAAGGTGGGATCCGCCTGGCTGCCACCCTTAACCGTATCTTTGCTTCTCAACC
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gtatactctctcagcattgaactcaaagtttcttggacatattagcttatctttgaacaatcagtgtatactctgaaacaagatcttagctttctttacccatacatgttcatctcagttatagacttgtatgcaatactgtgatcttcgagacttctctcgtgtt--tgttctgcagATGACTATTTCCTCTCTCGGTTACCCATTGTGGAGAAGAGACTTGCGCAAGGTGGGATACGCTTGGCAGCCACTCTTAACCGTATCTTTTCTTCAAAACC
upper sequence: Vv00s0301g00110.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT4G21600.1 (Arabidopsis thaliana), 3'ss of exon 9
tatgtttcttataagcattcaatatgctagttgaatttattgcttggagcatatctttttctgcagcc-tacttatgttttcatgttctg-ttgtgctatagATGATTACTTCCTGTCTCGGCTACCAATTGTGGAGAAGAGGCTAGCCCAAGGTGGGATCCGCCTGGCTGCCACCCTTAACCGTATCTTTGCTTCTCAACC
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-----------------gtatacttactctatgaaacca--gatcgtggctttttgttttctttaatcatggacatgacttgatcttctgctttctctgcagATGAGTATTTCCTTTCTCGGTTACCCGTTGTAGAGAAGAGACTTGCACAAGGTGGGATTCGCTTGGCAGCTACTCTTAATCGTATCTTTTCTGCAAAACC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggagcatatctttttctgcagcctacttatgttttcatgttctgttgtgctatagATGATTACTTCCTGTCTCGGCTACCAATTGTGGAGAAGAGGCTAGCCCAAGGTGGGATCCGCCTGGCTGCCACCCTTAACCGTATCTTTGCTTCTCAACC
ttctgtt CT-rich tract
atatcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatgtttcttataagcattcaatatgctagttgaatttattgcttggagcatatctttttctgcagcctacttatgttttcatgttctgttgtgctatagATGATTACTTCCTGTCTCGGCTACCAATTGTGGAGAAGAGGCTAGCCCAAGGTGGGATCCGCCTGGCTGCCACCCTTAACCGTATCTTTGCTTCTCAACC
- - - - - - - gcattca
- - - - - - - - - - - -atgctag
- - - - - - - - - - - - - - - - - - - - tgcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttc