Sequence
atgc intronic sequence ATGC exonic sequencegtatgcatcacttttttgaaccaaacgagctccaactgcatgttttacatcctgcagaaataaattaaggttttgttgatcatatccagGTTGTTGCAGAAGCAAGGAGTTCTGAAGCTTTTGTTGCTCTTTGCTTACTGACGGTTGCTGGGACTTCACTTGTTACCCAGAAGTTGGGCTTCAGTGACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G06890.1 (Glycine max), 3'ss of exon 9
-----------gtatgcatca----cttttttgaaccaaacgagctccaactgcatgt-tttacatcctgcagaaataaattaaggttttgttgatcatatccagGTTGTTGCAGAAGCAAGGAGTTCTGAAGCTTTTGTTGCTCTTTGCTTACTGACGGTTGCTGGGACTTCACTTGTTACCCAGAAGTTGGGCTTCAGTGACA
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gtctgtatcacatatatttcaagaaagatttttatccaaaaaaataaaatgtgtccaaactcatttttgatatgtgctaggcagtaaaatgttggtcaaattcagGTTGTTGCAGATACAAGGAGCTCTGAGGCTTTTGTTGCTCTTTGCTTGCTGACTGTTGCTGGGACTTCACTAGTCACACAGAATTTGGGATTTAGTGACA
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA07G30360.2 (Glycine max), 3'ss of exon 10
gtatgcatcacttttttgaaccaaacgagct--ccaactgcatgttttacatcc--------tgcagaaataaattaaggttt----tgttgatcatatccagGTTGTTGCAGAAGCAAGGAGTTCTGAAGCTTTTGTTGCTCTTTGCTTACTGACGGTTGCTGGGACTTCACTTGTTACCCAGAAGTTGGGCTTCAGTGACA
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gtctgtatcacatatttcaagaaagatttttatccaaaaaaataaaatgtgtccaaactcatttttgatatgtgctaggcagtaaaatgttggtcaaattcagGTTGTTGCAGATACAAGGAGCTCAGAGGCTTTTGTTGCTCTTTGCTTGCTGACTGTTGCAGGGACTTCACTAGTCACACAGAATTTGGGATTTAGTGACA
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 3'ss of exon 9
-----------------------------------------gtatgcatcacttttttgaaccaaacgagctccaactgcatgttttacatcctgcagaaataaattaaggttttgttgatcatatccagGTTGTTGCAGAAGCAAGGAGTTCTGAAGCTTTTGTTGCTCTTTGCTTACTGACGGTTGCTGGGACTTCACTTGTTACCCAGAAGTTGGGCTTCAGTGACA
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gtaacttatttcgtgtccttatagtttgacaaaaccctttcctttgaatcccccctttttagagagtgaatacaggacac-tgttttatttggtgcagtgcttaaatactaagcccaaaacaatattcagGTTGTTGCAGAAACAAGAAGCTCAGAAGCTTTTGTGGCCCTTTGCCTTCTCACAGTTGCTGGGACTTCACTTGTGACTCAATGGCTTGGTTTCAGCGATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actgcatgttttacatcctgcagaaataaattaaggttttgttgatcatatccagGTTGTTGCAGAAGCAAGGAGTTCTGAAGCTTTTGTTGCTCTTTGCTTACTGACGGTTGCTGGGACTTCACTTGTTACCCAGAAGTTGGGCTTCAGTGACA
tgttgat putative branch site (score: 4)
aaataaattaaggttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcatcacttttttgaaccaaacgagctccaactgcatgttttacatcctgcagaaataaattaaggttttgttgatcatatccagGTTGTTGCAGAAGCAAGGAGTTCTGAAGCTTTTGTTGCTCTTTGCTTACTGACGGTTGCTGGGACTTCACTTGTTACCCAGAAGTTGGGCTTCAGTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT