Sequence
atgc intronic sequence ATGC exonic sequence...tttcctgattgggtgtttaaggtggatggaatatccattctttgtacatttgaagtcattaaattaacttcttgttcatgtatgatgttttatcattcagATCAGAAACACAAGAACTGTCAACAGGACTGGGCAGCTAACAGGTTACAAGCTGGTACCTGGTTCAAATTGTTTACCATTAGCTGGTTCTGAGGCAAAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA02G04360.1 (Glycine max), 3'ss of exon 9
tttcctgattgggtgttt--aaggtg-gatggaatatccattctttgtacatttgaagtcattaaattaacttcttgttcatgtatgatgttttatcattcagATCAGAAACACAAGAACTGTCAACAGGACTGGGCAGCTAACAGGTTACAAGCTGGTACCTGGTTCAAATTGTTTACCATTAGCTGGTTCTGAGGCAAAAT
|| || | | | ||| || ||||| || || ||| | | ||| | ||||| | |||| ||| | || || | || |||||||| || || ||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||||| ||||| || |
ttctgcagttatatttctcaaagctgagatggtttacttgttagaaa-acactctttgacat-attttaaccagcgtcgctcaaatga-atttctttttttagGTTAGGAACACAAGGACGGTAAACCGAACTGGGCAGCTAACAGGATACAAGCTAGTACCTGGTTCAAATTGTTTACCCTTGGCTGGTTCAGAGGCCAAGT
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA18G20800.1 (Glycine max), 3'ss of exon 9
tttcctgattgggtgtttaaggtggatggaatatccattctttgtacatttgaagt---cattaaatt-aacttcttgttcatgt-atgatgttttatcattcagATCAGAAACACAAGAACTGTCAACAGGACTGGGCAGCTAACAGGTTACAAGCTGGTACCTGGTTCAAATTGTTTACCATTAGCTGGTTCTGAGGCAAAAT-
| | | || | ||| | | | | ||| ||| | || | | | || || ||| | | || | | | ||| || || | || |||||||| ||||| ||| | |||||||| ||||| ||||||||||| |||||||| |||||||||||||| |||||||| || ||||| || |
-----tacaggcatattcactgtgtcagtagt-tatattttttaaatgttgggattatttgctagtttgaacaaactatatatcttacaaaacattacattttaggTTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCTAGTACCTGGCTCAAATTGTTTACCTTTAGCTGGCTCAGAGGCTAAGTT
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G38990.1 (Glycine max), 3'ss of exon 9
tttcctgattgggtgtttaaggtggatggaatatccattctttgtacatttgaagtcatta--aatt--aacttcttgttcatgt-atgatgttttatcattcagATCAGAAACACAAGAACTGTCAACAGGACTGGGCAGCTAACAGGTTACAAGCTGGTACCTGGTTCAAATTGTTTACCATTAGCTGGTTCTGAGGCAAAAT
|| | | || | ||| | | | | ||| ||| | || | | | || | || ||| | | || | | || | ||| || || | || ||||| || ||||| ||| | |||||||| ||||| ||||||||||| |||||||| |||||||||||||| |||||||| || ||||| || |
----ctacaggcatattcactgtgtcagtagt-tatattttttaaatgttgggattatttgctagtttgaacaaactatatatcttacaatatattacattttagGTTAGGAACACTAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCTAGTACCTGGCTCAAATTGTTTACCTTTAGCTGGCTCAGAGGCCAAGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|83275167|gb|DV939263.1|DV939263EST: CAAGCAATGCGTGATTGCAATCCTTTATCTGCCCGACACTGGATT ATCAGAAACACAAGAACTGTCAACAGGACTGGGCAGCTAACAGGTTACAAG
genomic: CAAGCAATGCGTGATTGCAATCCTTTATCTGCCCGACACTGGATTgtaagtttcc ... tatcattcagATCAGAAACACAAGAACTGTCAACAGGACTGGGCAGCTAACAGGTTACAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acatttgaagtcattaaattaacttcttgttcatgtatgatgttttatcattcagATCAGAAACACAAGAACTGTCAACAGGACTGGGCAGCTAACAGGTTACAAGCTGGTACCTGGTTCAAATTGTTTACCATTAGCTGGTTCTGAGGCAAAAT
aattaac putative branch site (score: 2)
ttttatc putative PPT
attaaattaacttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttcctgattgggtgtttaaggtggatggaatatccattctttgtacatttgaagtcattaaattaacttcttgttcatgtatgatgttttatcattcagATCAGAAACACAAGAACTGTCAACAGGACTGGGCAGCTAACAGGTTACAAGCTGGTACCTGGTTCAAATTGTTTACCATTAGCTGGTTCTGAGGCAAAAT
- - -tgattgg
- - - - - - - - - - - tggatgg
- - - - - - - - - - - - - - - - - ccattct
- - - - - - - - - - - - - - - - - - - - - - - - - tgaagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaa